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1N8B
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
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(1)
Title
:
BACTERIOPHAGE T4 BASEPLATE STRUCTURAL PROTEIN GP8
Authors
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Date
:
20 Nov 02 (Deposition) - 10 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Bacteriophage T4, Baseplate, Dimer, Beta Sandwich, Halide Binding, Br, Bromine, Bromide, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Structure And Location Of Gene Product 8 In The Bacteriophage T4 Baseplate
J. Mol. Biol. V. 328 821 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 40)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1aa: BROMIDE ION (BRaa)
1ab: BROMIDE ION (BRab)
1ac: BROMIDE ION (BRac)
1ad: BROMIDE ION (BRad)
1ae: BROMIDE ION (BRae)
1af: BROMIDE ION (BRaf)
1ag: BROMIDE ION (BRag)
1ah: BROMIDE ION (BRah)
1ai: BROMIDE ION (BRai)
1aj: BROMIDE ION (BRaj)
1ak: BROMIDE ION (BRak)
1al: BROMIDE ION (BRal)
1am: BROMIDE ION (BRam)
1an: BROMIDE ION (BRan)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
1f: BROMIDE ION (BRf)
1g: BROMIDE ION (BRg)
1h: BROMIDE ION (BRh)
1i: BROMIDE ION (BRi)
1j: BROMIDE ION (BRj)
1k: BROMIDE ION (BRk)
1l: BROMIDE ION (BRl)
1m: BROMIDE ION (BRm)
1n: BROMIDE ION (BRn)
1o: BROMIDE ION (BRo)
1p: BROMIDE ION (BRp)
1q: BROMIDE ION (BRq)
1r: BROMIDE ION (BRr)
1s: BROMIDE ION (BRs)
1t: BROMIDE ION (BRt)
1u: BROMIDE ION (BRu)
1v: BROMIDE ION (BRv)
1w: BROMIDE ION (BRw)
1x: BROMIDE ION (BRx)
1y: BROMIDE ION (BRy)
1z: BROMIDE ION (BRz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
40
Ligand/Ion
BROMIDE ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:103 , TYR A:104 , THR A:105
BINDING SITE FOR RESIDUE BR A 335
02
AC2
SOFTWARE
HOH A:346 , ARG B:92
BINDING SITE FOR RESIDUE BR A 336
03
AC3
SOFTWARE
LEU A:22 , ASN A:23 , ASN A:26 , ASN B:35
BINDING SITE FOR RESIDUE BR A 337
04
AC4
SOFTWARE
VAL A:65 , ASN B:109
BINDING SITE FOR RESIDUE BR B 335
05
AC5
SOFTWARE
PRO A:213 , GLU A:214 , HOH A:349
BINDING SITE FOR RESIDUE BR A 338
06
AC6
SOFTWARE
LYS B:15
BINDING SITE FOR RESIDUE BR B 336
07
AC7
SOFTWARE
ASN A:201 , ARG A:202 , LYS A:250
BINDING SITE FOR RESIDUE BR A 339
08
AC8
SOFTWARE
SER A:84
BINDING SITE FOR RESIDUE BR A 340
09
AC9
SOFTWARE
LYS A:282
BINDING SITE FOR RESIDUE BR A 341
10
BC1
SOFTWARE
ARG A:17
BINDING SITE FOR RESIDUE BR A 342
11
BC2
SOFTWARE
TYR A:25
BINDING SITE FOR RESIDUE BR A 343
12
BC3
SOFTWARE
ASP B:102 , PRO B:103 , TYR B:104 , THR B:105 , ARG B:165 , TYR D:60
BINDING SITE FOR RESIDUE BR B 337
13
BC4
SOFTWARE
PRO B:213 , GLU B:214 , HOH B:357
BINDING SITE FOR RESIDUE BR B 339
14
BC5
SOFTWARE
VAL B:68
BINDING SITE FOR RESIDUE BR B 340
15
BC6
SOFTWARE
SER A:124 , HOH B:386
BINDING SITE FOR RESIDUE BR B 341
16
BC7
SOFTWARE
SER B:84
BINDING SITE FOR RESIDUE BR B 342
17
BC8
SOFTWARE
ALA B:281 , LYS B:282 , MET B:303
BINDING SITE FOR RESIDUE BR B 343
18
BC9
SOFTWARE
TYR B:25 , GLU B:214 , GLU B:215
BINDING SITE FOR RESIDUE BR B 344
19
CC1
SOFTWARE
SER B:30 , HOH B:350
BINDING SITE FOR RESIDUE BR B 345
20
CC2
SOFTWARE
ILE B:7
BINDING SITE FOR RESIDUE BR B 346
21
CC3
SOFTWARE
ASP C:102 , PRO C:103 , TYR C:104 , THR C:105
BINDING SITE FOR RESIDUE BR C 335
22
CC4
SOFTWARE
PRO C:118 , HOH C:344 , ARG D:92 , ASN D:205
BINDING SITE FOR RESIDUE BR C 336
23
CC5
SOFTWARE
ASN C:23 , ASN C:26
BINDING SITE FOR RESIDUE BR C 337
24
CC6
SOFTWARE
HOH C:368 , ASN D:109
BINDING SITE FOR RESIDUE BR C 338
25
CC7
SOFTWARE
ASN C:26 , PRO C:213 , GLU C:214 , HOH C:357
BINDING SITE FOR RESIDUE BR C 339
26
CC8
SOFTWARE
HOH C:351 , LYS D:15
BINDING SITE FOR RESIDUE BR D 335
27
CC9
SOFTWARE
PRO C:83 , SER C:84 , HOH C:376
BINDING SITE FOR RESIDUE BR C 341
28
DC1
SOFTWARE
LYS C:282
BINDING SITE FOR RESIDUE BR C 342
29
DC2
SOFTWARE
TRP C:160
BINDING SITE FOR RESIDUE BR C 343
30
DC3
SOFTWARE
ASP D:102 , TYR D:104 , THR D:105
BINDING SITE FOR RESIDUE BR D 336
31
DC4
SOFTWARE
ASN C:35 , LEU D:22 , ASN D:23 , ASN D:26
BINDING SITE FOR RESIDUE BR D 337
32
DC5
SOFTWARE
HOH C:418
BINDING SITE FOR RESIDUE BR D 338
33
DC6
SOFTWARE
ASN D:26 , PRO D:213 , GLU D:214 , HOH D:349
BINDING SITE FOR RESIDUE BR D 339
34
DC7
SOFTWARE
HOH C:413 , HOH D:367 , HOH D:369 , HOH D:407
BINDING SITE FOR RESIDUE BR D 340
35
DC8
SOFTWARE
SER C:124
BINDING SITE FOR RESIDUE BR D 341
36
DC9
SOFTWARE
SER D:84
BINDING SITE FOR RESIDUE BR D 342
37
EC1
SOFTWARE
MET D:303
BINDING SITE FOR RESIDUE BR D 343
38
EC2
SOFTWARE
LEU D:82 , PRO D:83
BINDING SITE FOR RESIDUE BR D 344
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1n8ba_ (A:)
1b: SCOP_d1n8bc_ (C:)
1c: SCOP_d1n8bd_ (D:)
1d: SCOP_d1n8bb_ (B:)
View:
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Classes
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Superfamilies
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)
(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Baseplate structural protein gp8
(3)
Superfamily
:
Baseplate structural protein gp8
(3)
Family
:
Baseplate structural protein gp8
(3)
Protein domain
:
Baseplate structural protein gp8
(3)
Bacteriophage T4 [TaxId: 10665]
(3)
1a
d1n8ba_
A:
1b
d1n8bc_
C:
1c
d1n8bd_
D:
1d
d1n8bb_
B:
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1n8bA02 (A:88-245)
1b: CATH_1n8bC02 (C:88-245)
1c: CATH_1n8bD02 (D:88-245)
1d: CATH_1n8bB02 (B:88-245)
2a: CATH_1n8bA01 (A:12-87,A:246-334)
2b: CATH_1n8bC01 (C:12-87,C:246-334)
2c: CATH_1n8bD01 (D:12-87,D:246-334)
2d: CATH_1n8bB01 (B:12-87,B:246-334)
View:
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Classes
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(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
baseplate structural protein gp8, domain 2
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 2
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
1a
1n8bA02
A:88-245
1b
1n8bC02
C:88-245
1c
1n8bD02
D:88-245
1d
1n8bB02
B:88-245
Architecture
:
Sandwich
(5577)
Topology
:
baseplate structural protein gp8, domain 1
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 1
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
2a
1n8bA01
A:12-87,A:246-334
2b
1n8bC01
C:12-87,C:246-334
2c
1n8bD01
D:12-87,D:246-334
2d
1n8bB01
B:12-87,B:246-334
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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