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1N82
Biol. Unit 2
Info
Asym.Unit (258 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (127 KB)
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(1)
Title
:
THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF IXT6, A THERMOPHILIC, INTRACELLULAR XYLANASE FROM G. STEAROTHERMOPHILUS
Authors
:
V. Solomon, A. Teplitsky, G. Golan, R. Gilboa, V. Reiland, S. Shulami, S G. Zolotnitsky, Y. Shoham, G. Shoham
Date
:
19 Nov 02 (Deposition) - 25 Nov 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. Solomon, A. Teplitsky, G. Golan, R. Gilboa, V. Reiland, S. Shulami, S. Moryles, G. Zolotnitsky, Y. Shoham, G. Shoham
The High-Resolution Crystal Structure Of Ixt6, A Thermophilic, Intracellular Xylanase From G. Stearothermophilus
To Be Published
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
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No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC4 (SOFTWARE)
6: BC5 (SOFTWARE)
7: BC6 (SOFTWARE)
8: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ASP B:1015 , ARG B:1282 , ILE B:1285 , GLN B:1286 , HOH B:4208
BINDING SITE FOR RESIDUE NA B 402
2
AC4
SOFTWARE
ASP A:65 , LYS A:125 , GOL A:472 , HOH A:4113 , GOL B:464 , CYS B:1113 , HOH B:4449
BINDING SITE FOR RESIDUE GOL B 455
3
AC7
SOFTWARE
ARG A:120 , ARG A:121 , HOH A:4055 , GOL B:455 , CYS B:1113 , SER B:1116 , ARG B:1120 , HOH B:4048 , HOH B:4163
BINDING SITE FOR RESIDUE GOL B 464
4
AC9
SOFTWARE
ASP B:1138 , ARG B:1145 , TYR B:1179 , ASN B:1180 , LYS B:1186 , HIS B:1250 , ASP B:1251
BINDING SITE FOR RESIDUE GOL B 466
5
BC4
SOFTWARE
ASP A:65 , ASP A:69 , HOH A:4038 , HOH A:4131 , HOH A:4517 , GOL B:455 , GOL B:473 , GLU B:1056
BINDING SITE FOR RESIDUE GOL A 472
6
BC5
SOFTWARE
GOL A:472 , HOH A:4517 , GLU B:1056 , ARG B:1110 , HOH B:4065 , HOH B:4197 , HOH B:4240 , HOH B:4443
BINDING SITE FOR RESIDUE GOL B 473
7
BC6
SOFTWARE
TRP B:1085 , GLU B:1134 , GLN B:1210 , HIS B:1212 , GLU B:1241 , ARG B:1252 , TRP B:1291 , HOH B:4090 , HOH B:4529
BINDING SITE FOR RESIDUE GOL B 474
8
BC7
SOFTWARE
ASP B:1065 , VAL B:1068 , ASP B:1069 , TYR B:1122 , LYS B:1125
BINDING SITE FOR RESIDUE GOL A 476
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1n82a_ (A:)
1b: SCOP_d1n82b_ (B:)
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Families
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase
(19)
Bacillus stearothermophilus, Ixt6 [TaxId: 1422]
(7)
1a
d1n82a_
A:
1b
d1n82b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1n82A00 (A:2-331)
1b: CATH_1n82B00 (B:1004-1331)
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)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: t-6.
(2)
1a
1n82A00
A:2-331
1b
1n82B00
B:1004-1331
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_10_1n82B01 (B:1007-1331)
1b: PFAM_Glyco_hydro_10_1n82B02 (B:1007-1331)
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Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_10
(42)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(11)
1a
Glyco_hydro_10-1n82B01
B:1007-1331
1b
Glyco_hydro_10-1n82B02
B:1007-1331
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Chain B
Asymmetric Unit 1
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Asym.Unit (258 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Biol.Unit 2 (127 KB)
Header - Biol.Unit 2
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