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1N7Z
Asym. Unit
Info
Asym.Unit (243 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (121 KB)
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(1)
Title
:
STRUCTURE AND LOCATION OF GENE PRODUCT 8 IN THE BACTERIOPHAGE T4 BASEPLATE
Authors
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Date
:
18 Nov 02 (Deposition) - 10 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Bacteriophage T4, Baseplate, Dimer, Beta Sandwich, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Leiman, M. M. Shneider, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, M. G. Rossmann
Structure And Location Of Gene Product 8 In The Bacteriophage T4 Baseplate
J. Mol. Biol. V. 328 821 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 78)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
30
Ligand/Ion
CHLORIDE ION
2
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:102 , PRO A:103 , TYR A:104 , THR A:105 , HOH A:1862
BINDING SITE FOR RESIDUE CL A 1701
02
AC2
SOFTWARE
ASN A:23 , ASN A:26 , HOH A:1829 , ASN B:35 , HOH B:1781
BINDING SITE FOR RESIDUE CL A 1702
03
AC3
SOFTWARE
TRP A:212 , PRO A:213 , GLU A:214
BINDING SITE FOR RESIDUE CL A 1703
04
AC4
SOFTWARE
ARG A:202 , SER B:124
BINDING SITE FOR RESIDUE CL A 1704
05
AC5
SOFTWARE
PRO A:83 , SER A:84
BINDING SITE FOR RESIDUE CL A 1705
06
AC6
SOFTWARE
ALA A:281 , LYS A:282 , MSE A:303
BINDING SITE FOR RESIDUE CL A 1706
07
AC7
SOFTWARE
ARG A:248
BINDING SITE FOR RESIDUE CL A 1707
08
AC8
SOFTWARE
TYR A:25 , TRP A:212 , GLU A:215 , HOH A:1932
BINDING SITE FOR RESIDUE CL A 1708
09
AC9
SOFTWARE
PRO B:103 , TYR B:104 , THR B:105
BINDING SITE FOR RESIDUE CL B 1709
10
BC1
SOFTWARE
TRP B:212 , PRO B:213 , GLU B:214 , HOH B:1990
BINDING SITE FOR RESIDUE CL B 1710
11
BC2
SOFTWARE
ASN B:201 , ARG B:202
BINDING SITE FOR RESIDUE CL B 1711
12
BC3
SOFTWARE
PRO B:83 , SER B:84 , HOH B:1889
BINDING SITE FOR RESIDUE CL B 1712
13
BC4
SOFTWARE
ALA B:281 , LYS B:282 , HOH B:1739
BINDING SITE FOR RESIDUE CL B 1713
14
BC5
SOFTWARE
ARG B:248 , LEU B:331 , HOH B:1977
BINDING SITE FOR RESIDUE CL B 1714
15
BC6
SOFTWARE
ASP C:102 , PRO C:103 , TYR C:104 , THR C:105
BINDING SITE FOR RESIDUE CL C 1715
16
BC7
SOFTWARE
LEU C:22 , ASN C:23 , ASN C:26 , ASN D:35 , HOH D:1795
BINDING SITE FOR RESIDUE CL C 1716
17
BC8
SOFTWARE
PRO C:213 , GLU C:214 , CL C:1722 , HOH C:1740 , HOH C:1860
BINDING SITE FOR RESIDUE CL C 1717
18
BC9
SOFTWARE
ASN C:201 , ARG C:202 , LYS C:250 , HOH C:1784 , HOH C:1943 , SER D:124
BINDING SITE FOR RESIDUE CL C 1718
19
CC1
SOFTWARE
PRO C:83 , SER C:84
BINDING SITE FOR RESIDUE CL C 1719
20
CC2
SOFTWARE
ALA C:281 , LYS C:282 , HOH C:1856
BINDING SITE FOR RESIDUE CL C 1720
21
CC3
SOFTWARE
ARG C:248 , HOH C:1831
BINDING SITE FOR RESIDUE CL C 1721
22
CC4
SOFTWARE
TYR C:25 , TRP C:212 , GLU C:215 , CL C:1717
BINDING SITE FOR RESIDUE CL C 1722
23
CC5
SOFTWARE
ASP D:102 , PRO D:103 , TYR D:104 , THR D:105
BINDING SITE FOR RESIDUE CL D 1723
24
CC6
SOFTWARE
PRO D:213 , GLU D:214 , HOH D:1974
BINDING SITE FOR RESIDUE CL D 1724
25
CC7
SOFTWARE
ARG D:202 , HOH D:1937
BINDING SITE FOR RESIDUE CL D 1725
26
CC8
SOFTWARE
PRO D:83 , SER D:84
BINDING SITE FOR RESIDUE CL D 1726
27
CC9
SOFTWARE
ALA D:281 , LYS D:282 , MSE D:303 , HOH D:1747 , HOH D:1827
BINDING SITE FOR RESIDUE CL D 1727
28
DC1
SOFTWARE
ARG D:248 , HOH D:1825
BINDING SITE FOR RESIDUE CL D 1728
29
DC2
SOFTWARE
ARG A:92 , HOH A:1827 , HOH A:1838
BINDING SITE FOR RESIDUE CL A 1729
30
DC3
SOFTWARE
ARG C:92 , HOH C:1737 , HOH C:1890
BINDING SITE FOR RESIDUE CL C 1730
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1n7za_ (A:)
1b: SCOP_d1n7zb_ (B:)
1c: SCOP_d1n7zc_ (C:)
1d: SCOP_d1n7zd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Baseplate structural protein gp8
(3)
Superfamily
:
Baseplate structural protein gp8
(3)
Family
:
Baseplate structural protein gp8
(3)
Protein domain
:
Baseplate structural protein gp8
(3)
Bacteriophage T4 [TaxId: 10665]
(3)
1a
d1n7za_
A:
1b
d1n7zb_
B:
1c
d1n7zc_
C:
1d
d1n7zd_
D:
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1n7zA02 (A:88-245)
1b: CATH_1n7zB02 (B:88-245)
1c: CATH_1n7zC02 (C:88-245)
1d: CATH_1n7zD02 (D:88-245)
2a: CATH_1n7zA01 (A:12-87,A:246-334)
2b: CATH_1n7zB01 (B:12-87,B:246-334)
2c: CATH_1n7zC01 (C:12-87,C:246-334)
2d: CATH_1n7zD01 (D:12-87,D:246-334)
View:
Select:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
baseplate structural protein gp8, domain 2
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 2
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
1a
1n7zA02
A:88-245
1b
1n7zB02
B:88-245
1c
1n7zC02
C:88-245
1d
1n7zD02
D:88-245
Architecture
:
Sandwich
(5577)
Topology
:
baseplate structural protein gp8, domain 1
(3)
Homologous Superfamily
:
baseplate structural protein gp8, domain 1
(3)
Enterobacteria phage t4. Organism_taxid: 10665.
(3)
2a
1n7zA01
A:12-87,A:246-334
2b
1n7zB01
B:12-87,B:246-334
2c
1n7zC01
C:12-87,C:246-334
2d
1n7zD01
D:12-87,D:246-334
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (243 KB)
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