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1N7S
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF A TRUNCATED NEURONAL SNARE COMPLEX
Authors
:
J. A. Ernst, A. T. Brunger
Date
:
16 Nov 02 (Deposition) - 27 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Neuronal Snare Protein Complex, Four Helix Bundle, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Ernst, A. T. Brunger
High Resolution Structure, Stability, And Synaptotagmin Binding Of A Truncated Neuronal Snare Complex
J. Biol. Chem. V. 278 8630 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:88 , HOH A:527 , HOH A:554 , LYS B:256 , HOH B:285 , GLN C:20
BINDING SITE FOR RESIDUE CA A 501
2
AC2
SOFTWARE
GLU C:27 , ASP C:80 , LYS C:83 , HOH C:504 , HOH C:553 , HOH C:554
BINDING SITE FOR RESIDUE CA C 502
3
AC3
SOFTWARE
GLU C:27 , ASP C:80 , HOH C:517 , HOH C:531 , HOH C:567
BINDING SITE FOR RESIDUE CA C 503
4
AC4
SOFTWARE
TYR A:88 , HOH B:285 , ASP C:19 , ASP C:23 , LEU C:81 , HOH C:504 , HOH C:539
BINDING SITE FOR RESIDUE MPD C 401
5
AC5
SOFTWARE
TRP A:89 , ASP B:231 , TYR B:235 , HOH C:528
BINDING SITE FOR RESIDUE MPD A 402
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 6)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (C:19-81|D:141-202,B:192-254)
2: V_SNARE (A:31-89)
3: SYNAPTOBREVIN (A:49-68)
4: SYNTAXIN (B:198-237)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_RAT
19-81
140-202
2
C:19-81
D:141-202
STX1A_RAT
192-254
1
B:192-254
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_RAT
31-91
1
A:31-89
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_RAT
49-68
1
A:49-68
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
1
B:198-237
[
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Exons
(3, 3)
Info
All Exons
Exon 1.7 (B:189-190)
Exon 1.8 (B:191-226)
Exon 1.9 (B:227-256)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
1
B:189-190
2
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
1
B:191-226
36
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
1
B:227-256
30
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
[
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]
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1n7sa_ (A:)
2a: SCOP_d1n7sc_ (C:)
2b: SCOP_d1n7sd_ (D:)
3a: SCOP_d1n7sb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
Synaptobrevin
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1n7sa_
A:
Protein domain
:
Synaptosomal-associated protein SNAP-25
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
2a
d1n7sc_
C:
2b
d1n7sd_
D:
Protein domain
:
Syntaxin 1A
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
3a
d1n7sb_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1n7sD00 (D:139-204)
1b: CATH_1n7sC00 (C:5-83)
1c: CATH_1n7sB00 (B:189-256)
1d: CATH_1n7sA00 (A:27-89)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Norway rat (Rattus norvegicus)
(5)
1a
1n7sD00
D:139-204
1b
1n7sC00
C:5-83
1c
1n7sB00
B:189-256
1d
1n7sA00
A:27-89
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (58 KB)
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