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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1N7D
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
EXTRACELLULAR DOMAIN OF THE LDL RECEPTOR
Authors
:
G. Rudenko, L. Henry, K. Henderson, K. Ichtchenko, M. S. Brown, J. L. Gol J. Deisenhofer
Date
:
13 Nov 02 (Deposition) - 21 Jan 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ldl-Receptor, Familial Hypercholesterolemia, Ldl, Cholesterol Metabolism, Lipid Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Rudenko, L. Henry, K. Henderson, K. Ichtchenko, M. S. Brown, J. L. Goldstein, J. Deisenhofer
Structure Of The Ldl Receptor Extracellular Domain At Endosomal Ph
Science V. 298 2353 2002
[
close entry info
]
Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: 12-TUNGSTOPHOSPHATE (KEGa)
3b: 12-TUNGSTOPHOSPHATE (KEGb)
3c: 12-TUNGSTOPHOSPHATE (KEGc)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
8
Ligand/Ion
CALCIUM ION
3
KEG
3
Ligand/Ion
12-TUNGSTOPHOSPHATE
4
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:132 , GLN A:133 , ASN A:135 , GLY A:155 , GLN A:161 , NAG A:2031
BINDING SITE FOR RESIDUE NAG A 2030
02
AC2
SOFTWARE
NAG A:2030 , BMA A:2032
BINDING SITE FOR RESIDUE NAG A 2031
03
AC3
SOFTWARE
NAG A:2031 , MAN A:2033 , MAN A:2035
BINDING SITE FOR RESIDUE BMA A 2032
04
AC4
SOFTWARE
BMA A:2032
BINDING SITE FOR RESIDUE MAN A 2033
05
AC5
SOFTWARE
BMA A:2032
BINDING SITE FOR RESIDUE MAN A 2035
06
AC6
SOFTWARE
ASN A:251 , VAL A:252 , ASN A:570 , NAG A:3031
BINDING SITE FOR RESIDUE NAG A 3030
07
AC7
SOFTWARE
ASN A:667 , NAG A:3030 , BMA A:3032
BINDING SITE FOR RESIDUE NAG A 3031
08
AC8
SOFTWARE
NAG A:3031 , MAN A:3033
BINDING SITE FOR RESIDUE BMA A 3032
09
AC9
SOFTWARE
BMA A:3032
BINDING SITE FOR RESIDUE MAN A 3033
10
BC1
SOFTWARE
THR A:294 , ASN A:295 , GLU A:296 , ASP A:310 , LEU A:311 , LYS A:312 , ILE A:313 , TYR A:315
BINDING SITE FOR RESIDUE CA A 1001
11
BC2
SOFTWARE
ASP A:333 , ILE A:334 , GLU A:336 , ASN A:349 , LEU A:350
BINDING SITE FOR RESIDUE CA A 1002
12
BC3
SOFTWARE
TRP A:193 , ASP A:196 , GLY A:198 , ASP A:200 , ASP A:206 , GLU A:207 , LYS A:582
BINDING SITE FOR RESIDUE CA A 1003
13
BC4
SOFTWARE
ARG A:232 , GLN A:233 , CYS A:234 , ASP A:235 , GLU A:237 , ASP A:239 , ASP A:245 , GLU A:246
BINDING SITE FOR RESIDUE CA A 1004
14
BC5
SOFTWARE
LYS A:273 , ASN A:276 , ASP A:280 , ASP A:286 , GLU A:287
BINDING SITE FOR RESIDUE CA A 1005
15
BC6
SOFTWARE
ASP A:147 , ASP A:149 , ASP A:151 , ASP A:157
BINDING SITE FOR RESIDUE CA A 1006
16
BC7
SOFTWARE
PHE A:105 , ASP A:108 , ASP A:110 , ASP A:112 , ASP A:118 , GLU A:119
BINDING SITE FOR RESIDUE CA A 1007
17
BC8
SOFTWARE
TRP A:66 , ASP A:69 , GLN A:71 , ASP A:73 , ASP A:79 , GLU A:80
BINDING SITE FOR RESIDUE CA A 1008
18
BC9
SOFTWARE
GLY A:55
BINDING SITE FOR RESIDUE KEG A 6001
19
CC1
SOFTWARE
ARG A:103 , GLN A:104 , SER A:449 , ARG A:450
BINDING SITE FOR RESIDUE KEG A 6002
20
CC2
SOFTWARE
ARG A:385 , ASN A:407
BINDING SITE FOR RESIDUE KEG A 6003
[
close Site info
]
SAPs(SNPs)/Variants
(170, 170)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_005308 (W66G, chain A, )
002: VAR_005309 (C68Y, chain A, )
003: VAR_005310 (D69G, chain A, )
004: VAR_005311 (D69N, chain A, )
005: VAR_005312 (D69Y, chain A, )
006: VAR_005313 (Q71E, chain A, )
007: VAR_005314 (C74G, chain A, )
008: VAR_005315 (E80K, chain A, )
009: VAR_059375 (P84S, chain A, )
010: VAR_005316 (C88R, chain A, )
011: VAR_005317 (C95R, chain A, )
012: VAR_062371 (C113F, chain A, )
013: VAR_062372 (C113W, chain A, )
014: VAR_065780 (D118H, chain A, )
015: VAR_005318 (E119K, chain A, )
016: VAR_072828 (C122R, chain A, )
017: VAR_072829 (C127Y, chain A, )
018: VAR_005319 (C134G, chain A, )
019: VAR_072830 (C134Y, chain A, )
020: VAR_005320 (C139Y, chain A, )
021: VAR_072831 (D147A, chain A, )
022: VAR_005321 (D147H, chain A, )
023: VAR_005322 (D147N, chain A, )
024: VAR_005323 (D147Y, chain A, )
025: VAR_013950 (D151H, chain A, )
026: VAR_072832 (D151N, chain A, )
027: VAR_005324 (C152R, chain A, )
028: VAR_005325 (C152W, chain A, )
029: VAR_005326 (D154N, chain A, )
030: VAR_007981 (D154Y, chain A, )
031: VAR_005327 (S156L, chain A, )
032: VAR_072833 (C163W, chain A, )
033: VAR_013951 (C163Y, chain A, )
034: VAR_005328 (C176F, chain A, )
035: VAR_005330 (C176R, chain A, )
036: VAR_005329 (C176Y, chain A, )
037: VAR_065781 (E180K, chain A, )
038: VAR_072834 (H190L, chain A, )
039: VAR_005332 (D200G, chain A, )
040: VAR_007982 (D200N, chain A, )
041: VAR_005333 (D200Y, chain A, )
042: VAR_062373 (C201Y, chain A, )
043: VAR_005335 (D203G, chain A, )
044: VAR_005334 (D203N, chain A, )
045: VAR_005336 (D203V, chain A, )
046: VAR_005337 (S205P, chain A, )
047: VAR_005338 (D206E, chain A, )
048: VAR_005341 (E207K, chain A, )
049: VAR_005340 (E207Q, chain A, )
050: VAR_005342 (C210G, chain A, )
051: VAR_005343 (E219K, chain A, )
052: VAR_072835 (C222R, chain A, )
053: VAR_005344 (C227F, chain A, )
054: VAR_005345 (C227Y, chain A, )
055: VAR_013952 (R232W, chain A, )
056: VAR_062374 (Q233P, chain A, )
057: VAR_065782 (C234S, chain A, )
058: VAR_005346 (D235G, chain A, )
059: VAR_072836 (R236W, chain A, )
060: VAR_013953 (C240F, chain A, )
061: VAR_005347 (D245E, chain A, )
062: VAR_005348 (C249Y, chain A, )
063: VAR_062375 (C255R, chain A, )
064: VAR_072837 (C255W, chain A, )
065: VAR_005349 (C255Y, chain A, )
066: VAR_005350 (E256K, chain A, )
067: VAR_072838 (H264Y, chain A, )
068: VAR_005351 (S265R, chain A, )
069: VAR_007983 (E267K, chain A, )
070: VAR_072839 (R279G, chain A, )
071: VAR_005352 (D280A, chain A, )
072: VAR_072840 (D280G, chain A, )
073: VAR_005354 (C281W, chain A, )
074: VAR_005353 (C281Y, chain A, )
075: VAR_005356 (D283E, chain A, )
076: VAR_005355 (D283N, chain A, )
077: VAR_005357 (S285L, chain A, )
078: VAR_005358 (C292Y, chain A, )
079: VAR_072841 (G293R, chain A, )
080: VAR_005360 (C297F, chain A, )
081: VAR_062376 (C297R, chain A, )
082: VAR_005359 (C297Y, chain A, )
083: VAR_072842 (S305C, chain A, )
084: VAR_005361 (H306Y, chain A, )
085: VAR_067196 (C308F, chain A, )
086: VAR_005362 (C308Y, chain A, )
087: VAR_005363 (G314S, chain A, )
088: VAR_005364 (C317S, chain A, )
089: VAR_005365 (D321E, chain A, )
090: VAR_005366 (D321N, chain A, )
091: VAR_005367 (G322S, chain A, )
092: VAR_005368 (R329P, chain A, )
093: VAR_072843 (C331R, chain A, )
094: VAR_005369 (C331Y, chain A, )
095: VAR_005370 (D333G, chain A, )
096: VAR_005371 (D333V, chain A, )
097: VAR_007984 (D335Y, chain A, )
098: VAR_005372 (E336K, chain A, )
099: VAR_062377 (C337Y, chain A, )
100: VAR_005373 (C343R, chain A, )
101: VAR_007985 (Q345R, chain A, )
102: VAR_005374 (C347R, chain A, )
103: VAR_072844 (C347Y, chain A, )
104: VAR_062378 (N349T, chain A, )
105: VAR_072845 (G352D, chain A, )
106: VAR_005375 (C358R, chain A, )
107: VAR_007986 (C358Y, chain A, )
108: VAR_024519 (A370T, chain A, )
109: VAR_005376 (A378D, chain A, )
110: VAR_005377 (L380H, chain A, )
111: VAR_007987 (L380V, chain A, )
112: VAR_008995 (F382L, chain A, )
113: VAR_072846 (T383P, chain A, )
114: VAR_013954 (R385Q, chain A, )
115: VAR_072847 (R385W, chain A, )
116: VAR_005378 (E387K, chain A, )
117: VAR_005379 (L393R, chain A, )
118: VAR_062379 (D394G, chain A, )
119: VAR_005380 (R395Q, chain A, )
120: VAR_005381 (R395W, chain A, )
121: VAR_005382 (I402T, chain A, )
122: VAR_005383 (V408M, chain A, )
123: VAR_005384 (A410T, chain A, )
124: VAR_007988 (L411V, chain A, )
125: VAR_005385 (D412H, chain A, )
126: VAR_005386 (T413K, chain A, )
127: VAR_005388 (I420M, chain A, )
128: VAR_005387 (I420N, chain A, )
129: VAR_072848 (Y421H, chain A, )
130: VAR_005389 (W422C, chain A, )
131: VAR_062380 (I430T, chain A, )
132: VAR_072849 (T433N, chain A, )
133: VAR_011863 (V447I, chain A, )
134: VAR_065783 (R450G, chain A, )
135: VAR_005390 (G457R, chain A, )
136: VAR_062381 (L458P, chain A, )
137: VAR_005391 (D461H, chain A, )
138: VAR_005392 (W462R, chain A, )
139: VAR_005394 (H464R, chain A, )
140: VAR_072850 (D471N, chain A, )
141: VAR_005395 (V502M, chain A, )
142: VAR_005396 (P505S, chain A, )
143: VAR_005397 (G525D, chain A, )
144: VAR_005398 (G528D, chain A, )
145: VAR_005399 (N543H, chain A, )
146: VAR_005400 (N543S, chain A, )
147: VAR_005401 (G544V, chain A, )
148: VAR_008996 (L547V, chain A, )
149: VAR_072851 (R553C, chain A, )
150: VAR_072852 (R553H, chain A, )
151: VAR_072853 (W556G, chain A, )
152: VAR_072854 (W556S, chain A, )
153: VAR_005402 (D558N, chain A, )
154: VAR_062382 (D558Y, chain A, )
155: VAR_072855 (I564T, chain A, )
156: VAR_005403 (G571E, chain A, )
157: VAR_072856 (R574W, chain A, )
158: VAR_005404 (L578S, chain A, )
159: VAR_072857 (D580H, chain A, )
160: VAR_007989 (P587S, chain A, )
161: VAR_005405 (R612C, chain A, )
162: VAR_072858 (V618D, chain A, )
163: VAR_005406 (P628L, chain A, )
164: VAR_005407 (C646Y, chain A, )
165: VAR_005408 (C656R, chain A, )
166: VAR_005409 (L661P, chain A, )
167: VAR_005410 (P664L, chain A, )
168: VAR_013955 (P678L, chain A, )
169: VAR_005412 (D679E, chain A, )
170: VAR_008997 (E693K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_005308
W
87
G
LDLR_HUMAN
Disease (FH)
---
A
W
66
G
002
UniProt
VAR_005309
C
89
Y
LDLR_HUMAN
Disease (FH)
---
A
C
68
Y
003
UniProt
VAR_005310
D
90
G
LDLR_HUMAN
Disease (FH)
---
A
D
69
G
004
UniProt
VAR_005311
D
90
N
LDLR_HUMAN
Disease (FH)
---
A
D
69
N
005
UniProt
VAR_005312
D
90
Y
LDLR_HUMAN
Disease (FH)
---
A
D
69
Y
006
UniProt
VAR_005313
Q
92
E
LDLR_HUMAN
Disease (FH)
---
A
Q
71
E
007
UniProt
VAR_005314
C
95
G
LDLR_HUMAN
Disease (FH)
---
A
C
74
G
008
UniProt
VAR_005315
E
101
K
LDLR_HUMAN
Disease (FH)
---
A
E
80
K
009
UniProt
VAR_059375
P
105
S
LDLR_HUMAN
Polymorphism
13306510
A
P
84
S
010
UniProt
VAR_005316
C
109
R
LDLR_HUMAN
Unclassified
---
A
C
88
R
011
UniProt
VAR_005317
C
116
R
LDLR_HUMAN
Disease (FH)
---
A
C
95
R
012
UniProt
VAR_062371
C
134
F
LDLR_HUMAN
Disease (FH)
---
A
C
113
F
013
UniProt
VAR_062372
C
134
W
LDLR_HUMAN
Disease (FH)
---
A
C
113
W
014
UniProt
VAR_065780
D
139
H
LDLR_HUMAN
Unclassified
---
A
D
118
H
015
UniProt
VAR_005318
E
140
K
LDLR_HUMAN
Disease (FH)
---
A
E
119
K
016
UniProt
VAR_072828
C
143
R
LDLR_HUMAN
Disease (FH)
---
A
C
122
R
017
UniProt
VAR_072829
C
148
Y
LDLR_HUMAN
Disease (FH)
---
A
C
127
Y
018
UniProt
VAR_005319
C
155
G
LDLR_HUMAN
Unclassified
---
A
C
134
G
019
UniProt
VAR_072830
C
155
Y
LDLR_HUMAN
Disease (FH)
---
A
C
134
Y
020
UniProt
VAR_005320
C
160
Y
LDLR_HUMAN
Unclassified
---
A
C
139
Y
021
UniProt
VAR_072831
D
168
A
LDLR_HUMAN
Unclassified
---
A
D
147
A
022
UniProt
VAR_005321
D
168
H
LDLR_HUMAN
Disease (FH)
---
A
D
147
H
023
UniProt
VAR_005322
D
168
N
LDLR_HUMAN
Disease (FH)
---
A
D
147
N
024
UniProt
VAR_005323
D
168
Y
LDLR_HUMAN
Disease (FH)
---
A
D
147
Y
025
UniProt
VAR_013950
D
172
H
LDLR_HUMAN
Unclassified
---
A
D
151
H
026
UniProt
VAR_072832
D
172
N
LDLR_HUMAN
Disease (FH)
---
A
D
151
N
027
UniProt
VAR_005324
C
173
R
LDLR_HUMAN
Unclassified
---
A
C
152
R
028
UniProt
VAR_005325
C
173
W
LDLR_HUMAN
Disease (FH)
---
A
C
152
W
029
UniProt
VAR_005326
D
175
N
LDLR_HUMAN
Disease (FH)
---
A
D
154
N
030
UniProt
VAR_007981
D
175
Y
LDLR_HUMAN
Disease (FH)
---
A
D
154
Y
031
UniProt
VAR_005327
S
177
L
LDLR_HUMAN
Disease (FH)
---
A
S
156
L
032
UniProt
VAR_072833
C
184
W
LDLR_HUMAN
Disease (FH)
---
A
C
163
W
033
UniProt
VAR_013951
C
184
Y
LDLR_HUMAN
Disease (FH)
---
A
C
163
Y
034
UniProt
VAR_005328
C
197
F
LDLR_HUMAN
Unclassified
---
A
C
176
F
035
UniProt
VAR_005330
C
197
R
LDLR_HUMAN
Disease (FH)
---
A
C
176
R
036
UniProt
VAR_005329
C
197
Y
LDLR_HUMAN
Unclassified
---
A
C
176
Y
037
UniProt
VAR_065781
E
201
K
LDLR_HUMAN
Unclassified
---
A
E
180
K
038
UniProt
VAR_072834
H
211
L
LDLR_HUMAN
Unclassified
---
A
H
190
L
039
UniProt
VAR_005332
D
221
G
LDLR_HUMAN
Disease (FH)
---
A
D
200
G
040
UniProt
VAR_007982
D
221
N
LDLR_HUMAN
Disease (FH)
---
A
D
200
N
041
UniProt
VAR_005333
D
221
Y
LDLR_HUMAN
Disease (FH)
---
A
D
200
Y
042
UniProt
VAR_062373
C
222
Y
LDLR_HUMAN
Disease (FH)
---
A
C
201
Y
043
UniProt
VAR_005335
D
224
G
LDLR_HUMAN
Unclassified
---
A
D
203
G
044
UniProt
VAR_005334
D
224
N
LDLR_HUMAN
Unclassified
---
A
D
203
N
045
UniProt
VAR_005336
D
224
V
LDLR_HUMAN
Disease (FH)
---
A
D
203
V
046
UniProt
VAR_005337
S
226
P
LDLR_HUMAN
Unclassified
---
A
S
205
P
047
UniProt
VAR_005338
D
227
E
LDLR_HUMAN
Disease (FH)
---
A
D
206
E
048
UniProt
VAR_005341
E
228
K
LDLR_HUMAN
Disease (FH)
---
A
E
207
K
049
UniProt
VAR_005340
E
228
Q
LDLR_HUMAN
Unclassified
---
A
E
207
Q
050
UniProt
VAR_005342
C
231
G
LDLR_HUMAN
Disease (FH)
---
A
C
210
G
051
UniProt
VAR_005343
E
240
K
LDLR_HUMAN
Unclassified
---
A
E
219
K
052
UniProt
VAR_072835
C
243
R
LDLR_HUMAN
Unclassified
---
A
C
222
R
053
UniProt
VAR_005344
C
248
F
LDLR_HUMAN
Unclassified
---
A
C
227
F
054
UniProt
VAR_005345
C
248
Y
LDLR_HUMAN
Disease (FH)
---
A
C
227
Y
055
UniProt
VAR_013952
R
253
W
LDLR_HUMAN
Unclassified
---
A
R
232
W
056
UniProt
VAR_062374
Q
254
P
LDLR_HUMAN
Disease (FH)
---
A
Q
233
P
057
UniProt
VAR_065782
C
255
S
LDLR_HUMAN
Unclassified
---
A
C
234
S
058
UniProt
VAR_005346
D
256
G
LDLR_HUMAN
Unclassified
---
A
D
235
G
059
UniProt
VAR_072836
R
257
W
LDLR_HUMAN
Polymorphism
200990725
A
R
236
W
060
UniProt
VAR_013953
C
261
F
LDLR_HUMAN
Disease (FH)
---
A
C
240
F
061
UniProt
VAR_005347
D
266
E
LDLR_HUMAN
Unclassified
---
A
D
245
E
062
UniProt
VAR_005348
C
270
Y
LDLR_HUMAN
Unclassified
---
A
C
249
Y
063
UniProt
VAR_062375
C
276
R
LDLR_HUMAN
Disease (FH)
---
A
C
255
R
064
UniProt
VAR_072837
C
276
W
LDLR_HUMAN
Unclassified
---
A
C
255
W
065
UniProt
VAR_005349
C
276
Y
LDLR_HUMAN
Disease (FH)
---
A
C
255
Y
066
UniProt
VAR_005350
E
277
K
LDLR_HUMAN
Unclassified
148698650
A
E
256
K
067
UniProt
VAR_072838
H
285
Y
LDLR_HUMAN
Unclassified
---
A
H
264
Y
068
UniProt
VAR_005351
S
286
R
LDLR_HUMAN
Unclassified
---
A
S
265
R
069
UniProt
VAR_007983
E
288
K
LDLR_HUMAN
Disease (FH)
---
A
E
267
K
070
UniProt
VAR_072839
R
300
G
LDLR_HUMAN
Disease (FH)
---
A
R
279
G
071
UniProt
VAR_005352
D
301
A
LDLR_HUMAN
Disease (FH)
---
A
D
280
A
072
UniProt
VAR_072840
D
301
G
LDLR_HUMAN
Disease (FH)
---
A
D
280
G
073
UniProt
VAR_005354
C
302
W
LDLR_HUMAN
Disease (FH)
---
A
C
281
W
074
UniProt
VAR_005353
C
302
Y
LDLR_HUMAN
Disease (FH)
---
A
C
281
Y
075
UniProt
VAR_005356
D
304
E
LDLR_HUMAN
Unclassified
---
A
D
283
E
076
UniProt
VAR_005355
D
304
N
LDLR_HUMAN
Unclassified
---
A
D
283
N
077
UniProt
VAR_005357
S
306
L
LDLR_HUMAN
Unclassified
11547917
A
S
285
L
078
UniProt
VAR_005358
C
313
Y
LDLR_HUMAN
Disease (FH)
---
A
C
292
Y
079
UniProt
VAR_072841
G
314
R
LDLR_HUMAN
Unclassified
---
A
G
293
R
080
UniProt
VAR_005360
C
318
F
LDLR_HUMAN
Disease (FH)
---
A
C
297
F
081
UniProt
VAR_062376
C
318
R
LDLR_HUMAN
Disease (FH)
---
A
C
297
R
082
UniProt
VAR_005359
C
318
Y
LDLR_HUMAN
Unclassified
---
A
C
297
Y
083
UniProt
VAR_072842
S
326
C
LDLR_HUMAN
Unclassified
---
A
S
305
C
084
UniProt
VAR_005361
H
327
Y
LDLR_HUMAN
Disease (FH)
---
A
H
306
Y
085
UniProt
VAR_067196
C
329
F
LDLR_HUMAN
Disease (FH)
---
A
C
308
F
086
UniProt
VAR_005362
C
329
Y
LDLR_HUMAN
Disease (FH)
---
A
C
308
Y
087
UniProt
VAR_005363
G
335
S
LDLR_HUMAN
Unclassified
---
A
G
314
S
088
UniProt
VAR_005364
C
338
S
LDLR_HUMAN
Disease (FH)
---
A
C
317
S
089
UniProt
VAR_005365
D
342
E
LDLR_HUMAN
Unclassified
---
A
D
321
E
090
UniProt
VAR_005366
D
342
N
LDLR_HUMAN
Unclassified
139361635
A
D
321
N
091
UniProt
VAR_005367
G
343
S
LDLR_HUMAN
Unclassified
---
A
G
322
S
092
UniProt
VAR_005368
R
350
P
LDLR_HUMAN
Disease (FH)
---
A
R
329
P
093
UniProt
VAR_072843
C
352
R
LDLR_HUMAN
Unclassified
---
A
C
331
R
094
UniProt
VAR_005369
C
352
Y
LDLR_HUMAN
Unclassified
---
A
C
331
Y
095
UniProt
VAR_005370
D
354
G
LDLR_HUMAN
Unclassified
---
A
D
333
G
096
UniProt
VAR_005371
D
354
V
LDLR_HUMAN
Unclassified
---
A
D
333
V
097
UniProt
VAR_007984
D
356
Y
LDLR_HUMAN
Disease (FH)
---
A
D
335
Y
098
UniProt
VAR_005372
E
357
K
LDLR_HUMAN
Unclassified
---
A
E
336
K
099
UniProt
VAR_062377
C
358
Y
LDLR_HUMAN
Disease (FH)
---
A
C
337
Y
100
UniProt
VAR_005373
C
364
R
LDLR_HUMAN
Unclassified
---
A
C
343
R
101
UniProt
VAR_007985
Q
366
R
LDLR_HUMAN
Disease (FH)
---
A
Q
345
R
102
UniProt
VAR_005374
C
368
R
LDLR_HUMAN
Disease (FH)
---
A
C
347
R
103
UniProt
VAR_072844
C
368
Y
LDLR_HUMAN
Unclassified
---
A
C
347
Y
104
UniProt
VAR_062378
N
370
T
LDLR_HUMAN
Disease (FH)
---
A
N
349
T
105
UniProt
VAR_072845
G
373
D
LDLR_HUMAN
Unclassified
---
A
G
352
D
106
UniProt
VAR_005375
C
379
R
LDLR_HUMAN
Unclassified
---
A
C
358
R
107
UniProt
VAR_007986
C
379
Y
LDLR_HUMAN
Disease (FH)
---
A
C
358
Y
108
UniProt
VAR_024519
A
391
T
LDLR_HUMAN
Polymorphism
11669576
A
A
370
T
109
UniProt
VAR_005376
A
399
D
LDLR_HUMAN
Disease (FH)
---
A
A
378
D
110
UniProt
VAR_005377
L
401
H
LDLR_HUMAN
Unclassified
---
A
L
380
H
111
UniProt
VAR_007987
L
401
V
LDLR_HUMAN
Disease (FH)
---
A
L
380
V
112
UniProt
VAR_008995
F
403
L
LDLR_HUMAN
Disease (FH)
---
A
F
382
L
113
UniProt
VAR_072846
T
404
P
LDLR_HUMAN
Unclassified
---
A
T
383
P
114
UniProt
VAR_013954
R
406
Q
LDLR_HUMAN
Unclassified
---
A
R
385
Q
115
UniProt
VAR_072847
R
406
W
LDLR_HUMAN
Unclassified
---
A
R
385
W
116
UniProt
VAR_005378
E
408
K
LDLR_HUMAN
Unclassified
---
A
E
387
K
117
UniProt
VAR_005379
L
414
R
LDLR_HUMAN
Disease (FH)
---
A
L
393
R
118
UniProt
VAR_062379
D
415
G
LDLR_HUMAN
Disease (FH)
---
A
D
394
G
119
UniProt
VAR_005380
R
416
Q
LDLR_HUMAN
Disease (FH)
---
A
R
395
Q
120
UniProt
VAR_005381
R
416
W
LDLR_HUMAN
Disease (FH)
---
A
R
395
W
121
UniProt
VAR_005382
I
423
T
LDLR_HUMAN
Disease (FH)
---
A
I
402
T
122
UniProt
VAR_005383
V
429
M
LDLR_HUMAN
Disease (FH)
28942078
A
V
408
M
123
UniProt
VAR_005384
A
431
T
LDLR_HUMAN
Unclassified
28942079
A
A
410
T
124
UniProt
VAR_007988
L
432
V
LDLR_HUMAN
Disease (FH)
---
A
L
411
V
125
UniProt
VAR_005385
D
433
H
LDLR_HUMAN
Disease (FH)
---
A
D
412
H
126
UniProt
VAR_005386
T
434
K
LDLR_HUMAN
Unclassified
---
A
T
413
K
127
UniProt
VAR_005388
I
441
M
LDLR_HUMAN
Unclassified
---
A
I
420
M
128
UniProt
VAR_005387
I
441
N
LDLR_HUMAN
Unclassified
---
A
I
420
N
129
UniProt
VAR_072848
Y
442
H
LDLR_HUMAN
Unclassified
---
A
Y
421
H
130
UniProt
VAR_005389
W
443
C
LDLR_HUMAN
Unclassified
---
A
W
422
C
131
UniProt
VAR_062380
I
451
T
LDLR_HUMAN
Disease (FH)
---
A
I
430
T
132
UniProt
VAR_072849
T
454
N
LDLR_HUMAN
Disease (FH)
---
A
T
433
N
133
UniProt
VAR_011863
V
468
I
LDLR_HUMAN
Polymorphism
5932
A
V
447
I
134
UniProt
VAR_065783
R
471
G
LDLR_HUMAN
Unclassified
---
A
R
450
G
135
UniProt
VAR_005390
G
478
R
LDLR_HUMAN
Unclassified
---
A
G
457
R
136
UniProt
VAR_062381
L
479
P
LDLR_HUMAN
Disease (FH)
---
A
L
458
P
137
UniProt
VAR_005391
D
482
H
LDLR_HUMAN
Disease (FH)
---
A
D
461
H
138
UniProt
VAR_005392
W
483
R
LDLR_HUMAN
Disease (FH)
---
A
W
462
R
139
UniProt
VAR_005394
H
485
R
LDLR_HUMAN
Unclassified
---
A
H
464
R
140
UniProt
VAR_072850
D
492
N
LDLR_HUMAN
Unclassified
---
A
D
471
N
141
UniProt
VAR_005395
V
523
M
LDLR_HUMAN
Disease (FH)
28942080
A
V
502
M
142
UniProt
VAR_005396
P
526
S
LDLR_HUMAN
Unclassified
---
A
P
505
S
143
UniProt
VAR_005397
G
546
D
LDLR_HUMAN
Polymorphism
28942081
A
G
525
D
144
UniProt
VAR_005398
G
549
D
LDLR_HUMAN
Disease (FH)
28941776
A
G
528
D
145
UniProt
VAR_005399
N
564
H
LDLR_HUMAN
Disease (FH)
28942086
A
N
543
H
146
UniProt
VAR_005400
N
564
S
LDLR_HUMAN
Disease (FH)
---
A
N
543
S
147
UniProt
VAR_005401
G
565
V
LDLR_HUMAN
Polymorphism
28942082
A
G
544
V
148
UniProt
VAR_008996
L
568
V
LDLR_HUMAN
Disease (FH)
---
A
L
547
V
149
UniProt
VAR_072851
R
574
C
LDLR_HUMAN
Disease (FH)
---
A
R
553
C
150
UniProt
VAR_072852
R
574
H
LDLR_HUMAN
Unclassified
---
A
R
553
H
151
UniProt
VAR_072853
W
577
G
LDLR_HUMAN
Disease (FH)
---
A
W
556
G
152
UniProt
VAR_072854
W
577
S
LDLR_HUMAN
Unclassified
---
A
W
556
S
153
UniProt
VAR_005402
D
579
N
LDLR_HUMAN
Disease (FH)
---
A
D
558
N
154
UniProt
VAR_062382
D
579
Y
LDLR_HUMAN
Disease (FH)
---
A
D
558
Y
155
UniProt
VAR_072855
I
585
T
LDLR_HUMAN
Unclassified
---
A
I
564
T
156
UniProt
VAR_005403
G
592
E
LDLR_HUMAN
Disease (FH)
---
A
G
571
E
157
UniProt
VAR_072856
R
595
W
LDLR_HUMAN
Unclassified
---
A
R
574
W
158
UniProt
VAR_005404
L
599
S
LDLR_HUMAN
Unclassified
---
A
L
578
S
159
UniProt
VAR_072857
D
601
H
LDLR_HUMAN
Unclassified
---
A
D
580
H
160
UniProt
VAR_007989
P
608
S
LDLR_HUMAN
Disease (FH)
---
A
P
587
S
161
UniProt
VAR_005405
R
633
C
LDLR_HUMAN
Disease (FH)
---
A
R
612
C
162
UniProt
VAR_072858
V
639
D
LDLR_HUMAN
Disease (FH)
---
A
V
618
D
163
UniProt
VAR_005406
P
649
L
LDLR_HUMAN
Disease (FH)
---
A
P
628
L
164
UniProt
VAR_005407
C
667
Y
LDLR_HUMAN
Disease (FH)
28942083
A
C
646
Y
165
UniProt
VAR_005408
C
677
R
LDLR_HUMAN
Disease (FH)
---
A
C
656
R
166
UniProt
VAR_005409
L
682
P
LDLR_HUMAN
Unclassified
---
A
L
661
P
167
UniProt
VAR_005410
P
685
L
LDLR_HUMAN
Disease (FH)
28942084
A
P
664
L
168
UniProt
VAR_013955
P
699
L
LDLR_HUMAN
Unclassified
---
A
P
678
L
169
UniProt
VAR_005412
D
700
E
LDLR_HUMAN
Disease (FH)
---
A
D
679
E
170
UniProt
VAR_008997
E
714
K
LDLR_HUMAN
Disease (FH)
---
A
E
693
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(7, 24)
Info
All PROSITE Patterns/Profiles
1: LDLRA_2 (-|A:46-84|A:87-123|A:126-164|A:175...)
2: LDLRA_1 (-|A:61-83|A:103-122|A:139-163|A:18...)
3: EGF_3 (A:293-332|A:333-372)
4: ASX_HYDROXYL (A:308-319|A:347-358)
5: EGF_2 (A:317-331|A:356-371)
6: EGF_CA (A:333-356)
7: LDLRB (A:418-464|A:465-507|A:508-551|A:55...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRA_2
PS50068
LDL-receptor class A (LDLRA) domain profile.
LDLR_HUMAN
26-64
67-105
108-144
147-185
196-232
235-271
275-314
6
-
A:46-84
A:87-123
A:126-164
A:175-211
A:214-250
A:254-293
2
LDLRA_1
PS01209
LDL-receptor class A (LDLRA) domain signature.
LDLR_HUMAN
39-63
82-104
121-143
160-184
209-231
248-270
289-313
6
-
A:61-83
A:103-122
A:139-163
A:188-210
A:227-249
A:268-292
3
EGF_3
PS50026
EGF-like domain profile.
LDLR_HUMAN
314-353
354-393
2
A:293-332
A:333-372
4
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
LDLR_HUMAN
329-340
368-379
2
A:308-319
A:347-358
5
EGF_2
PS01186
EGF-like domain signature 2.
LDLR_HUMAN
338-352
377-392
2
A:317-331
A:356-371
6
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
LDLR_HUMAN
354-377
1
A:333-356
7
LDLRB
PS51120
LDL-receptor class B (LDLRB) repeat profile.
LDLR_HUMAN
439-485
486-528
529-572
573-617
618-658
5
A:418-464
A:465-507
A:508-551
A:552-596
A:597-637
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 10)
Info
All SCOP Domains
1a: SCOP_d1n7da1 (A:377-642)
2a: SCOP_d1n7da2 (A:296-332)
2b: SCOP_d1n7da3 (A:333-376)
2c: SCOP_d1n7da4 (A:643-693)
3a: SCOP_d1n7da5 (A:44-83)
3b: SCOP_d1n7da6 (A:84-124)
3c: SCOP_d1n7da7 (A:125-174)
3d: SCOP_d1n7da8 (A:175-211)
3e: SCOP_d1n7da9 (A:212-251)
3f: SCOP_d1n7daa (A:252-295)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
YWTD domain
(3)
Family
:
YWTD domain
(3)
Protein domain
:
Low density lipoprotein (LDL) receptor
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1n7da1
A:377-642
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Low density lipoprotein (LDL) receptor, different EGF domains
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1n7da2
A:296-332
2b
d1n7da3
A:333-376
2c
d1n7da4
A:643-693
Fold
:
LDL receptor-like module
(20)
Superfamily
:
LDL receptor-like module
(20)
Family
:
LDL receptor-like module
(19)
Protein domain
:
Ligand-binding domain of low-density lipoprotein receptor
(13)
Human (Homo sapiens) [TaxId: 9606]
(13)
3a
d1n7da5
A:44-83
3b
d1n7da6
A:84-124
3c
d1n7da7
A:125-174
3d
d1n7da8
A:175-211
3e
d1n7da9
A:212-251
3f
d1n7daa
A:252-295
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1n7dA04 (A:171-212)
1b: CATH_1n7dA01 (A:44-96)
2a: CATH_1n7dA09 (A:378-642)
3a: CATH_1n7dA08 (A:333-377)
3b: CATH_1n7dA07 (A:295-332)
3c: CATH_1n7dA10 (A:643-693)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Low-density Lipoprotein Receptor
(15)
Homologous Superfamily
:
Low-density Lipoprotein Receptor
(15)
Human (Homo sapiens)
(12)
1a
1n7dA04
A:171-212
1b
1n7dA01
A:44-96
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Human (Homo sapiens)
(2)
2a
1n7dA09
A:378-642
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
3a
1n7dA08
A:333-377
3b
1n7dA07
A:295-332
3c
1n7dA10
A:643-693
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Ldl_recept_b_1n7dA01 (A:595-635)
1b: PFAM_Ldl_recept_b_1n7dA02 (A:595-635)
1c: PFAM_Ldl_recept_b_1n7dA03 (A:595-635)
1d: PFAM_Ldl_recept_b_1n7dA04 (A:595-635)
1e: PFAM_Ldl_recept_b_1n7dA05 (A:595-635)
2a: PFAM_EGF_CA_1n7dA06 (A:333-371)
3a: PFAM_Ldl_recept_a_1n7dA07 (A:253-292)
3b: PFAM_Ldl_recept_a_1n7dA08 (A:253-292)
3c: PFAM_Ldl_recept_a_1n7dA09 (A:253-292)
3d: PFAM_Ldl_recept_a_1n7dA10 (A:253-292)
3e: PFAM_Ldl_recept_a_1n7dA11 (A:253-292)
3f: PFAM_Ldl_recept_a_1n7dA12 (A:253-292)
View:
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Clans
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)
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Families
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)
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)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
Ldl_recept_b
(3)
Homo sapiens (Human)
(2)
1a
Ldl_recept_b-1n7dA01
A:595-635
1b
Ldl_recept_b-1n7dA02
A:595-635
1c
Ldl_recept_b-1n7dA03
A:595-635
1d
Ldl_recept_b-1n7dA04
A:595-635
1e
Ldl_recept_b-1n7dA05
A:595-635
Clan
:
EGF
(60)
Family
:
EGF_CA
(18)
Homo sapiens (Human)
(14)
2a
EGF_CA-1n7dA06
A:333-371
Clan
:
no clan defined [family: Ldl_recept_a]
(10)
Family
:
Ldl_recept_a
(10)
Homo sapiens (Human)
(9)
3a
Ldl_recept_a-1n7dA07
A:253-292
3b
Ldl_recept_a-1n7dA08
A:253-292
3c
Ldl_recept_a-1n7dA09
A:253-292
3d
Ldl_recept_a-1n7dA10
A:253-292
3e
Ldl_recept_a-1n7dA11
A:253-292
3f
Ldl_recept_a-1n7dA12
A:253-292
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