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1N6J
Asym. Unit
Info
Asym.Unit (105 KB)
Biol.Unit 1 (51 KB)
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Models
(2 )
Title
:
STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RECRUITMENT OF HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2
Authors
:
A. Han, F. Pan, J. C. Stroud, H. D. Youn, J. O. Liu, L. Chen
Date
:
11 Nov 02 (Deposition) - 11 Nov 03 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,G (2 x)
Biol. Unit 1: A,B,C,D,G (1x)
Keywords
:
Mads-Box, Protein-Dna Complex, Histone Deacetylases, Transcription- Dna Complex
(Keyword Search:
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)
Reference
:
A. Han, F. Pan, J. C. Stroud, H. D. Youn, J. O. Liu, L. Chen
Sequence-Specific Recruitment Of Transcriptional Co-Repressor Cabin1 By Myocyte Enhancer Factor-2
Nature V. 422 730 2003
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MADS_BOX_1 (A:3-57,B:3-57)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MADS_BOX_1
PS00350
MADS-box domain signature.
MEF2B_HUMAN
3-57
2
A:3-57
B:3-57
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Exons
(2, 2)
Info
All Exons
Exon 1.42b (G:101-115)
Exon 1.43b (G:116-126)
View:
Select:
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All Exon Boundaries
1: Boundary 1.41b/1.42b
2: Boundary 1.42b/1.43b
3: Boundary 1.43b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000398319
2b
ENSE00001631216
chr22:
24407868-24408178
311
CABIN_HUMAN
-
0
0
-
-
1.3
ENST00000398319
3
ENSE00001361081
chr22:
24431892-24431968
77
CABIN_HUMAN
1-1
1
0
-
-
1.4
ENST00000398319
4
ENSE00001257233
chr22:
24432537-24432629
93
CABIN_HUMAN
2-32
31
0
-
-
1.5
ENST00000398319
5
ENSE00000651602
chr22:
24434796-24434909
114
CABIN_HUMAN
33-70
38
0
-
-
1.6
ENST00000398319
6
ENSE00000651603
chr22:
24437587-24437721
135
CABIN_HUMAN
71-115
45
0
-
-
1.7
ENST00000398319
7
ENSE00000651604
chr22:
24439366-24439546
181
CABIN_HUMAN
116-176
61
0
-
-
1.8
ENST00000398319
8
ENSE00000651605
chr22:
24445553-24445682
130
CABIN_HUMAN
176-219
44
0
-
-
1.9
ENST00000398319
9
ENSE00000651606
chr22:
24447287-24447436
150
CABIN_HUMAN
219-269
51
0
-
-
1.10a
ENST00000398319
10a
ENSE00000651607
chr22:
24451336-24451622
287
CABIN_HUMAN
269-365
97
0
-
-
1.11c
ENST00000398319
11c
ENSE00000651608
chr22:
24452655-24452823
169
CABIN_HUMAN
365-421
57
0
-
-
1.12
ENST00000398319
12
ENSE00000651609
chr22:
24455690-24455826
137
CABIN_HUMAN
421-467
47
0
-
-
1.13
ENST00000398319
13
ENSE00000651610
chr22:
24456387-24456604
218
CABIN_HUMAN
467-539
73
0
-
-
1.14
ENST00000398319
14
ENSE00000651611
chr22:
24458410-24458488
79
CABIN_HUMAN
540-566
27
0
-
-
1.15
ENST00000398319
15
ENSE00000651612
chr22:
24459422-24459609
188
CABIN_HUMAN
566-628
63
0
-
-
1.16
ENST00000398319
16
ENSE00000651613
chr22:
24460498-24460650
153
CABIN_HUMAN
629-679
51
0
-
-
1.17a
ENST00000398319
17a
ENSE00001256688
chr22:
24462938-24463132
195
CABIN_HUMAN
680-744
65
0
-
-
1.18a
ENST00000398319
18a
ENSE00000651615
chr22:
24466751-24466993
243
CABIN_HUMAN
745-825
81
0
-
-
1.19
ENST00000398319
19
ENSE00000651616
chr22:
24468304-24468460
157
CABIN_HUMAN
826-878
53
0
-
-
1.20
ENST00000398319
20
ENSE00000651617
chr22:
24472118-24472233
116
CABIN_HUMAN
878-916
39
0
-
-
1.21
ENST00000398319
21
ENSE00000651618
chr22:
24479181-24479342
162
CABIN_HUMAN
917-970
54
0
-
-
1.22
ENST00000398319
22
ENSE00000651619
chr22:
24480532-24480738
207
CABIN_HUMAN
971-1039
69
0
-
-
1.23
ENST00000398319
23
ENSE00000651620
chr22:
24480959-24481104
146
CABIN_HUMAN
1040-1088
49
0
-
-
1.24a
ENST00000398319
24a
ENSE00000651622
chr22:
24483405-24483666
262
CABIN_HUMAN
1088-1175
88
0
-
-
1.25a
ENST00000398319
25a
ENSE00000651625
chr22:
24487537-24487797
261
CABIN_HUMAN
1176-1262
87
0
-
-
1.26
ENST00000398319
26
ENSE00000651626
chr22:
24491894-24492045
152
CABIN_HUMAN
1263-1313
51
0
-
-
1.27b
ENST00000398319
27b
ENSE00000651628
chr22:
24493977-24494155
179
CABIN_HUMAN
1313-1373
61
0
-
-
1.28
ENST00000398319
28
ENSE00000651629
chr22:
24509533-24509715
183
CABIN_HUMAN
1373-1434
62
0
-
-
1.29b
ENST00000398319
29b
ENSE00000651631
chr22:
24515334-24515665
332
CABIN_HUMAN
1434-1544
111
0
-
-
1.30
ENST00000398319
30
ENSE00000651632
chr22:
24530269-24530382
114
CABIN_HUMAN
1545-1582
38
0
-
-
1.35b
ENST00000398319
35b
ENSE00000651635
chr22:
24560368-24560531
164
CABIN_HUMAN
1583-1637
55
0
-
-
1.36
ENST00000398319
36
ENSE00000879517
chr22:
24561498-24561594
97
CABIN_HUMAN
1637-1669
33
0
-
-
1.37a
ENST00000398319
37a
ENSE00000879518
chr22:
24562607-24563281
675
CABIN_HUMAN
1670-1894
225
0
-
-
1.38
ENST00000398319
38
ENSE00000879519
chr22:
24564415-24564489
75
CABIN_HUMAN
1895-1919
25
0
-
-
1.39
ENST00000398319
39
ENSE00000651645
chr22:
24567681-24567963
283
CABIN_HUMAN
1920-2014
95
0
-
-
1.41b
ENST00000398319
41b
ENSE00000651649
chr22:
24572079-24572243
165
CABIN_HUMAN
2014-2069
56
0
-
-
1.42b
ENST00000398319
42b
ENSE00001256752
chr22:
24573472-24573785
314
CABIN_HUMAN
2069-2173
105
1
G:101-115
15
1.43b
ENST00000398319
43b
ENSE00001257253
chr22:
24574021-24574596
576
CABIN_HUMAN
2174-2220
47
1
G:116-126
11
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1n6ja_ (A:)
1b: SCOP_d1n6jb_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SRF-like
(11)
Superfamily
:
SRF-like
(11)
Family
:
SRF-like
(11)
Protein domain
:
Myocyte enhancer factor Mef2b core
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1n6ja_
A:
1b
d1n6jb_
B:
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CATH Domains
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_MEF2_binding_1n6jG01 (G:101-126)
2a: PFAM_SRF_TF_1n6jB01 (B:9-59)
2b: PFAM_SRF_TF_1n6jB02 (B:9-59)
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Clan
:
no clan defined [family: MEF2_binding]
(1)
Family
:
MEF2_binding
(1)
Homo sapiens (Human)
(1)
1a
MEF2_binding-1n6jG01
G:101-126
Clan
:
no clan defined [family: SRF-TF]
(4)
Family
:
SRF-TF
(4)
Homo sapiens (Human)
(4)
2a
SRF-TF-1n6jB01
B:9-59
2b
SRF-TF-1n6jB02
B:9-59
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