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1N6E
Asym. Unit
Info
Asym.Unit (1017 KB)
Biol.Unit 1 (1007 KB)
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(1)
Title
:
TRICORN PROTEASE IN COMPLEX WITH A TRIDECAPEPTIDE CHLOROMETHYL KETONE DERIVATIVE
Authors
:
J. -S. Kim, M. Groll, R. Huber, H. Brandstetter
Date
:
10 Nov 02 (Deposition) - 30 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Tricorn Protease, Hydrolase, Propeller
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. -S. Kim, M. Groll, H. -J. Musiol, R. Behrendt, M. Kaiser, L. Moroder, R. Huber, H. Brandstetter
Navigation Inside A Protease: Substrate Selection And Product Exit In The Tricorn Protease From Thermoplasma Acidophilum
J. Mol. Biol. V. 324 1041 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 1,3-DICHLORO-PROPAN-2-ONE (CHMa)
1b: 1,3-DICHLORO-PROPAN-2-ONE (CHMb)
1c: 1,3-DICHLORO-PROPAN-2-ONE (CHMc)
1d: 1,3-DICHLORO-PROPAN-2-ONE (CHMd)
1e: 1,3-DICHLORO-PROPAN-2-ONE (CHMe)
1f: 1,3-DICHLORO-PROPAN-2-ONE (CHMf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CHM
6
Ligand/Ion
1,3-DICHLORO-PROPAN-2-ONE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:746 , SER A:965 , ASP A:966 , PHE B:1213
BINDING SITE FOR RESIDUE CHM B 2213
2
AC2
SOFTWARE
HIS C:746 , SER C:965 , ASP C:966 , PHE D:1213
BINDING SITE FOR RESIDUE CHM D 2213
3
AC3
SOFTWARE
HIS E:746 , SER E:965 , ASP E:966 , PHE F:1213
BINDING SITE FOR RESIDUE CHM F 2213
4
AC4
SOFTWARE
HIS G:746 , SER G:965 , ASP G:966 , PHE H:1213
BINDING SITE FOR RESIDUE CHM H 2213
5
AC5
SOFTWARE
HIS I:746 , SER I:965 , ASP I:966 , PHE J:1213
BINDING SITE FOR RESIDUE CHM J 2213
6
AC6
SOFTWARE
HIS K:746 , SER K:965 , ASP K:966 , PHE L:1213
BINDING SITE FOR RESIDUE CHM L 2213
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 24)
Info
All SCOP Domains
1a: SCOP_d1n6ea2 (A:39-319)
1b: SCOP_d1n6ei2 (I:39-319)
1c: SCOP_d1n6ek2 (K:39-319)
1d: SCOP_d1n6ec2 (C:39-319)
1e: SCOP_d1n6ee2 (E:39-319)
1f: SCOP_d1n6eg2 (G:39-319)
2a: SCOP_d1n6ea3 (A:320-679)
2b: SCOP_d1n6ei3 (I:320-679)
2c: SCOP_d1n6ek3 (K:320-679)
2d: SCOP_d1n6ec3 (C:320-679)
2e: SCOP_d1n6ee3 (E:320-679)
2f: SCOP_d1n6eg3 (G:320-679)
3a: SCOP_d1n6ea1 (A:763-853)
3b: SCOP_d1n6ei1 (I:763-853)
3c: SCOP_d1n6ek1 (K:763-853)
3d: SCOP_d1n6ec1 (C:763-853)
3e: SCOP_d1n6ee1 (E:763-853)
3f: SCOP_d1n6eg1 (G:763-853)
4a: SCOP_d1n6ea4 (A:680-762,A:854-1061)
4b: SCOP_d1n6ei4 (I:680-762,I:854-1061)
4c: SCOP_d1n6ek4 (K:680-762,K:854-1061)
4d: SCOP_d1n6ec4 (C:680-762,C:854-1061)
4e: SCOP_d1n6ee4 (E:680-762,E:854-1061)
4f: SCOP_d1n6eg4 (G:680-762,G:854-1061)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Tricorn protease N-terminal domain
(4)
Family
:
Tricorn protease N-terminal domain
(4)
Protein domain
:
Tricorn protease N-terminal domain
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
1a
d1n6ea2
A:39-319
1b
d1n6ei2
I:39-319
1c
d1n6ek2
K:39-319
1d
d1n6ec2
C:39-319
1e
d1n6ee2
E:39-319
1f
d1n6eg2
G:39-319
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Tricorn protease domain 2
(4)
Family
:
Tricorn protease domain 2
(4)
Protein domain
:
Tricorn protease domain 2
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
2a
d1n6ea3
A:320-679
2b
d1n6ei3
I:320-679
2c
d1n6ek3
K:320-679
2d
d1n6ec3
C:320-679
2e
d1n6ee3
E:320-679
2f
d1n6eg3
G:320-679
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
Tail specific protease PDZ domain
(8)
Protein domain
:
Tricorn protease
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
3a
d1n6ea1
A:763-853
3b
d1n6ei1
I:763-853
3c
d1n6ek1
K:763-853
3d
d1n6ec1
C:763-853
3e
d1n6ee1
E:763-853
3f
d1n6eg1
G:763-853
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Tail specific protease, catalytic domain
(9)
Protein domain
:
Tricorn protease
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
4a
d1n6ea4
A:680-762,A:854-1061
4b
d1n6ei4
I:680-762,I:854-1061
4c
d1n6ek4
K:680-762,K:854-1061
4d
d1n6ec4
C:680-762,C:854-1061
4e
d1n6ee4
E:680-762,E:854-1061
4f
d1n6eg4
G:680-762,G:854-1061
[
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]
CATH Domains
(5, 30)
Info
all CATH domains
1a: CATH_1n6eA03 (A:681-752)
1b: CATH_1n6eC03 (C:681-752)
1c: CATH_1n6eE03 (E:681-752)
1d: CATH_1n6eG03 (G:681-752)
1e: CATH_1n6eI03 (I:681-752)
1f: CATH_1n6eK03 (K:681-752)
2a: CATH_1n6eA05 (A:856-1061)
2b: CATH_1n6eC05 (C:856-1061)
2c: CATH_1n6eE05 (E:856-1061)
2d: CATH_1n6eG05 (G:856-1061)
2e: CATH_1n6eI05 (I:856-1061)
2f: CATH_1n6eK05 (K:856-1061)
3a: CATH_1n6eA01 (A:39-310)
3b: CATH_1n6eC01 (C:39-310)
3c: CATH_1n6eE01 (E:39-310)
3d: CATH_1n6eG01 (G:39-310)
3e: CATH_1n6eI01 (I:39-310)
3f: CATH_1n6eK01 (K:39-310)
4a: CATH_1n6eA02 (A:326-675)
4b: CATH_1n6eC02 (C:326-675)
4c: CATH_1n6eE02 (E:326-675)
4d: CATH_1n6eG02 (G:326-675)
4e: CATH_1n6eI02 (I:326-675)
4f: CATH_1n6eK02 (K:326-675)
5a: CATH_1n6eA04 (A:761-855)
5b: CATH_1n6eC04 (C:761-855)
5c: CATH_1n6eE04 (E:761-855)
5d: CATH_1n6eG04 (G:761-855)
5e: CATH_1n6eI04 (I:761-855)
5f: CATH_1n6eK04 (K:761-855)
View:
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Transcription Regulator spoIIAA
(28)
Homologous Superfamily
:
[code=3.30.750.44, no name defined]
(4)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
1a
1n6eA03
A:681-752
1b
1n6eC03
C:681-752
1c
1n6eE03
E:681-752
1d
1n6eG03
G:681-752
1e
1n6eI03
I:681-752
1f
1n6eK03
K:681-752
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
2a
1n6eA05
A:856-1061
2b
1n6eC05
C:856-1061
2c
1n6eE05
E:856-1061
2d
1n6eG05
G:856-1061
2e
1n6eI05
I:856-1061
2f
1n6eK05
K:856-1061
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
Tricorn protease N-terminal domain
(4)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
3a
1n6eA01
A:39-310
3b
1n6eC01
C:39-310
3c
1n6eE01
E:39-310
3d
1n6eG01
G:39-310
3e
1n6eI01
I:39-310
3f
1n6eK01
K:39-310
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
4a
1n6eA02
A:326-675
4b
1n6eC02
C:326-675
4c
1n6eE02
E:326-675
4d
1n6eG02
G:326-675
4e
1n6eI02
I:326-675
4f
1n6eK02
K:326-675
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
5a
1n6eA04
A:761-855
5b
1n6eC04
C:761-855
5c
1n6eE04
E:761-855
5d
1n6eG04
G:761-855
5e
1n6eI04
I:761-855
5f
1n6eK04
K:761-855
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_PD40_1n6eK01 (K:492-523)
1b: PFAM_PD40_1n6eK02 (K:492-523)
1c: PFAM_PD40_1n6eK03 (K:492-523)
1d: PFAM_PD40_1n6eK04 (K:492-523)
1e: PFAM_PD40_1n6eK05 (K:492-523)
1f: PFAM_PD40_1n6eK06 (K:492-523)
2a: PFAM_Peptidase_S41_1n6eK07 (K:878-1033)
2b: PFAM_Peptidase_S41_1n6eK08 (K:878-1033)
2c: PFAM_Peptidase_S41_1n6eK09 (K:878-1033)
2d: PFAM_Peptidase_S41_1n6eK10 (K:878-1033)
2e: PFAM_Peptidase_S41_1n6eK11 (K:878-1033)
2f: PFAM_Peptidase_S41_1n6eK12 (K:878-1033)
View:
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
PD40
(5)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(4)
1a
PD40-1n6eK01
K:492-523
1b
PD40-1n6eK02
K:492-523
1c
PD40-1n6eK03
K:492-523
1d
PD40-1n6eK04
K:492-523
1e
PD40-1n6eK05
K:492-523
1f
PD40-1n6eK06
K:492-523
Clan
:
ClpP_crotonase
(88)
Family
:
Peptidase_S41
(5)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(4)
2a
Peptidase_S41-1n6eK07
K:878-1033
2b
Peptidase_S41-1n6eK08
K:878-1033
2c
Peptidase_S41-1n6eK09
K:878-1033
2d
Peptidase_S41-1n6eK10
K:878-1033
2e
Peptidase_S41-1n6eK11
K:878-1033
2f
Peptidase_S41-1n6eK12
K:878-1033
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