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1N5A
Asym. Unit
Info
Asym.Unit (265 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (67 KB)
Biol.Unit 4 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX OF H-2DB, B2-MICROGLOBULIN, AND A 9-RESIDUE IMMUNODOMINANT PEPTIDE EPITOPE GP33 DERIVED FROM LCMV
Authors
:
A. Achour, J. Michaelsson, R. A. Harris, J. Odeberg, P. Grufman, J. K. Sa V. Levitsky, K. Karre, T. Sandalova, G. Schneider
Date
:
05 Nov 02 (Deposition) - 07 Jan 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Murine Mhc, Viral Escape, Lcmv, Immunodominant Epitope, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Achour, J. Michaelsson, R. A. Harris, J. Odeberg, P. Grufman, J. K. Sandberg, V. Levitsky, K. Karre, T. Sandalova, G. Schneider
A Structural Basis For Lcmv Immune Evasion. Subversion Of H-2D(B) And H-2K(B) Presentation Of Gp33 Revealed By Comparative Crystal Structure Analyses.
Immunity V. 17 757 2002
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(5, 20)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B/E/H/K, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B/E/H/K, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B/E/H/K, )
4: VAR_B2MG_MOUSE_005 (D85D, chain B/E/H/K, )
5: VAR_B2MG_MOUSE_006 (D85V, chain B/E/H/K, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B/E/H/K
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B/E/H/K
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B/E/H/K
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B/E/H/K
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B/E/H/K
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,E:78-84,H:78-84,K:78-84,A:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
4
B:78-84
E:78-84
H:78-84
K:78-84
HA11_MOUSE
281-287
4
A:257-263
D:257-263
G:257-263
J:257-263
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1n5ab_ (B:)
1b: SCOP_d1n5ae_ (E:)
1c: SCOP_d1n5ah_ (H:)
1d: SCOP_d1n5ak_ (K:)
2a: SCOP_d1n5aa1 (A:182-276)
2b: SCOP_d1n5ad1 (D:182-274)
2c: SCOP_d1n5ag1 (G:182-274)
2d: SCOP_d1n5aj1 (J:182-274)
3a: SCOP_d1n5aa2 (A:1-181)
3b: SCOP_d1n5ad2 (D:1-181)
3c: SCOP_d1n5ag2 (G:2-181)
3d: SCOP_d1n5aj2 (J:2-181)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d1n5ab_
B:
1b
d1n5ae_
E:
1c
d1n5ah_
H:
1d
d1n5ak_
K:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d1n5aa1
A:182-276
2b
d1n5ad1
D:182-274
2c
d1n5ag1
G:182-274
2d
d1n5aj1
J:182-274
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2DB [TaxId: 10090]
(25)
3a
d1n5aa2
A:1-181
3b
d1n5ad2
D:1-181
3c
d1n5ag2
G:2-181
3d
d1n5aj2
J:2-181
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1n5aG01 (G:2-181)
1b: CATH_1n5aJ01 (J:2-181)
1c: CATH_1n5aA01 (A:1-181)
1d: CATH_1n5aD01 (D:1-181)
2a: CATH_1n5aE00 (E:1-99)
2b: CATH_1n5aA02 (A:182-272)
2c: CATH_1n5aD02 (D:182-272)
2d: CATH_1n5aG02 (G:182-272)
2e: CATH_1n5aJ02 (J:182-272)
2f: CATH_1n5aH00 (H:1-99)
2g: CATH_1n5aK00 (K:1-99)
2h: CATH_1n5aB00 (B:1-98)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1n5aG01
G:2-181
1b
1n5aJ01
J:2-181
1c
1n5aA01
A:1-181
1d
1n5aD01
D:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1n5aE00
E:1-99
2b
1n5aA02
A:182-272
2c
1n5aD02
D:182-272
2d
1n5aG02
G:182-272
2e
1n5aJ02
J:182-272
2f
1n5aH00
H:1-99
2g
1n5aK00
K:1-99
2h
1n5aB00
B:1-98
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Pfam Domains
(3, 16)
Info
all PFAM domains
1a: PFAM_C1_set_1n5aK01 (K:11-92)
1b: PFAM_C1_set_1n5aK02 (K:11-92)
1c: PFAM_C1_set_1n5aK03 (K:11-92)
1d: PFAM_C1_set_1n5aK04 (K:11-92)
1e: PFAM_C1_set_1n5aJ01 (J:189-271)
1f: PFAM_C1_set_1n5aJ02 (J:189-271)
1g: PFAM_C1_set_1n5aJ03 (J:189-271)
1h: PFAM_C1_set_1n5aJ04 (J:189-271)
2a: PFAM_MHC_I_1n5aJ05 (J:2-179)
2b: PFAM_MHC_I_1n5aJ06 (J:2-179)
2c: PFAM_MHC_I_1n5aJ07 (J:2-179)
2d: PFAM_MHC_I_1n5aJ08 (J:2-179)
3a: PFAM_Arena_glycoprot_1n5aL01 (L:1-8)
3b: PFAM_Arena_glycoprot_1n5aL02 (L:1-8)
3c: PFAM_Arena_glycoprot_1n5aL03 (L:1-8)
3d: PFAM_Arena_glycoprot_1n5aL04 (L:1-8)
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Clans
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)
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-1n5aK01
K:11-92
1b
C1-set-1n5aK02
K:11-92
1c
C1-set-1n5aK03
K:11-92
1d
C1-set-1n5aK04
K:11-92
1e
C1-set-1n5aJ01
J:189-271
1f
C1-set-1n5aJ02
J:189-271
1g
C1-set-1n5aJ03
J:189-271
1h
C1-set-1n5aJ04
J:189-271
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Mus musculus (Mouse)
(60)
2a
MHC_I-1n5aJ05
J:2-179
2b
MHC_I-1n5aJ06
J:2-179
2c
MHC_I-1n5aJ07
J:2-179
2d
MHC_I-1n5aJ08
J:2-179
Clan
:
no clan defined [family: Arena_glycoprot]
(10)
Family
:
Arena_glycoprot
(10)
Lymphocytic choriomeningitis virus
(2)
3a
Arena_glycoprot-1n5aL01
L:1-8
3b
Arena_glycoprot-1n5aL02
L:1-8
3c
Arena_glycoprot-1n5aL03
L:1-8
3d
Arena_glycoprot-1n5aL04
L:1-8
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Asym.Unit (265 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
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Biol.Unit 3 (67 KB)
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