PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1N4Q
Asym. Unit
Info
Asym.Unit (685 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (119 KB)
Biol.Unit 4 (118 KB)
Biol.Unit 5 (120 KB)
Biol.Unit 6 (123 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GGPP ANALOG AND A KKKSKTKCVIL PEPTIDE
Authors
:
J. S. Taylor, T. S. Reid, P. J. Casey, L. S. Beese
Date
:
01 Nov 02 (Deposition) - 18 Nov 03 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,M (1x)
Biol. Unit 2: C,D,N (1x)
Biol. Unit 3: E,F,O (1x)
Biol. Unit 4: G,H,P (1x)
Biol. Unit 5: I,J,Q (1x)
Biol. Unit 6: K,L,R (1x)
Keywords
:
Protein Geranylgeranyltransferase Type-I, Ggtase, Geranylgeranyl, Protein Prenylation, Caax, Lipid Modification, Rap2B, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Taylor, T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Structure Of Mammalian Protein Geranylgeranyltransferase Type-I
Embo J. V. 22 5963 2003
[
close entry info
]
Hetero Components
(4, 20)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: GERAN-8-YL GERAN (GERa)
3a: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMa)
3b: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMb)
3c: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMc)
3d: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMd)
3e: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMe)
3f: 2-[METHYL-(5-GERANYL-4-METHYL-PENT... (MGMf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
2
GER
1
Ligand/Ion
GERAN-8-YL GERAN
3
MGM
6
Ligand/Ion
2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4
ZN
6
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:269 , CYS B:271 , HIS B:321 , CYS M:108
BINDING SITE FOR RESIDUE ZN B 378
02
AC2
SOFTWARE
ASP D:269 , CYS D:271 , HIS D:321 , CYS N:208
BINDING SITE FOR RESIDUE ZN D 378
03
AC3
SOFTWARE
ARG C:253 , ARG C:287 , ARG C:291 , TYR C:292
BINDING SITE FOR RESIDUE CL C 1301
04
AC4
SOFTWARE
LYS D:284 , ILE D:285 , PHE D:286 , GLN D:287
BINDING SITE FOR RESIDUE CL D 1306
05
AC5
SOFTWARE
ASP F:269 , CYS F:271 , HIS F:321 , CYS O:308
BINDING SITE FOR RESIDUE ZN F 378
06
AC6
SOFTWARE
LYS F:284 , ILE F:285 , PHE F:286 , GLN F:287
BINDING SITE FOR RESIDUE CL F 1309
07
AC7
SOFTWARE
ASP H:269 , CYS H:271 , HIS H:321 , CYS P:408
BINDING SITE FOR RESIDUE ZN H 378
08
AC8
SOFTWARE
ARG G:287 , ARG G:291 , TYR G:292 , HOH G:1323
BINDING SITE FOR RESIDUE CL G 1311
09
AC9
SOFTWARE
LYS H:284 , ILE H:285 , PHE H:286 , GLN H:287
BINDING SITE FOR RESIDUE CL H 1312
10
BC1
SOFTWARE
ASP J:269 , CYS J:271 , HIS J:321 , CYS Q:508
BINDING SITE FOR RESIDUE ZN J 378
11
BC2
SOFTWARE
LYS J:281 , LYS J:284 , ILE J:285 , PHE J:286 , GLN J:287
BINDING SITE FOR RESIDUE CL J 1315
12
BC3
SOFTWARE
ASP L:269 , CYS L:271 , HIS L:321 , HOH L:1410
BINDING SITE FOR RESIDUE ZN L 378
13
BC4
SOFTWARE
HOH A:418 , ARG K:287 , TYR K:292 , HOH K:1332
BINDING SITE FOR RESIDUE CL K 1317
14
BC5
SOFTWARE
ARG L:39 , TYR L:40 , LEU L:43 , ILE L:50 , PHE L:53 , ASP L:318 , ALA L:319 , CYS R:608 , VAL R:609 , ILE R:610
BINDING SITE FOR RESIDUE GER R 1300
15
BC6
SOFTWARE
LYS A:164 , TYR A:166 , TYR A:200 , HOH A:444 , THR B:127 , ARG B:173 , HIS B:219 , ARG B:263 , LYS B:266 , TYR B:272 , TRP B:275 , HOH B:1443 , HOH B:1452 , VAL M:109 , ILE M:110
BINDING SITE FOR RESIDUE MGM B 1401
16
BC7
SOFTWARE
LYS C:164 , TYR C:166 , TYR C:200 , HOH C:1358 , THR D:127 , ARG D:173 , HIS D:219 , ARG D:263 , LYS D:266 , TYR D:272 , TRP D:275 , HOH D:1461 , HOH D:1477 , VAL N:209 , ILE N:210
BINDING SITE FOR RESIDUE MGM D 1402
17
BC8
SOFTWARE
LYS E:164 , TYR E:166 , TYR E:200 , THR F:127 , ARG F:173 , HIS F:219 , ARG F:263 , LYS F:266 , TYR F:272 , TRP F:275 , HOH F:1455 , HOH F:1459 , VAL O:309 , ILE O:310
BINDING SITE FOR RESIDUE MGM F 1403
18
BC9
SOFTWARE
LYS G:164 , TYR G:166 , TYR G:200 , THR H:127 , ARG H:173 , HIS H:219 , ARG H:263 , LYS H:266 , TYR H:272 , TRP H:275 , HOH H:1435 , HOH H:1441 , VAL P:409 , ILE P:410
BINDING SITE FOR RESIDUE MGM H 1404
19
CC1
SOFTWARE
LYS I:164 , TYR I:166 , TYR I:200 , HOH I:443 , THR J:127 , ARG J:173 , HIS J:219 , ARG J:263 , LYS J:266 , TYR J:272 , TRP J:275 , HOH J:1462 , VAL Q:509 , ILE Q:510
BINDING SITE FOR RESIDUE MGM J 1405
20
CC2
SOFTWARE
LYS K:164 , TYR K:200 , ARG L:173 , HIS L:219 , ARG L:263 , LYS L:266 , TYR L:272 , TRP L:275 , HOH L:1472 , HOH L:1484 , HOH L:1499 , VAL R:609
BINDING SITE FOR RESIDUE MGM L 1406
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 30)
Info
All PROSITE Patterns/Profiles
1: PFTA (A:112-146,C:112-146,E:112-146,G:11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFTA
PS51147
Protein prenyltransferases alpha subunit repeat profile.
FNTA_RAT
112-146
147-181
215-249
182-214
255-289
30
A:112-146
C:112-146
E:112-146
G:112-146
I:112-146
K:112-146
A:147-181
C:147-181
E:147-181
G:147-181
I:147-181
K:147-181
A:215-249
C:215-249
E:215-249
G:215-249
I:215-249
K:215-249
A:182-214
C:182-214
E:182-214
G:182-214
I:182-214
K:182-214
A:255-289
C:255-289
E:255-289
G:255-289
I:255-289
K:255-289
[
close PROSITE info
]
Exons
(10, 60)
Info
All Exons
Exon 1.1 (B:18-47 | D:18-47 | F:18-47 | H:18...)
Exon 1.2 (B:47-87 | D:47-87 | F:47-87 | H:47...)
Exon 1.3 (B:87-109 | D:87-109 | F:87-109 | H...)
Exon 1.4 (B:110-160 | D:110-160 | F:110-160 ...)
Exon 1.5 (B:160-204 | D:160-204 | F:160-204 ...)
Exon 1.6 (B:205-220 | D:205-220 | F:205-220 ...)
Exon 1.7 (B:220-281 | D:220-281 | F:220-281 ...)
Exon 1.8 (B:282-318 | D:282-318 | F:282-318 ...)
Exon 1.9 (B:318-363 | D:318-363 | F:318-363 ...)
Exon 2.5b (M:107-111 | N:207-211 | O:307-311 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/-
11: Boundary 2.4/2.5b
12: Boundary 2.5b/2.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000004723
1
ENSRNOE00000033103
chr18:
40452883-40452737
147
PGTB1_RAT
1-47
47
6
B:18-47
D:18-47
F:18-47
H:18-47
J:18-47
L:18-47
30
30
30
30
30
30
1.2
ENSRNOT00000004723
2
ENSRNOE00000033155
chr18:
40448055-40447937
119
PGTB1_RAT
47-87
41
6
B:47-87
D:47-87
F:47-87
H:47-87
J:47-87
L:47-87
41
41
41
41
41
41
1.3
ENSRNOT00000004723
3
ENSRNOE00000033179
chr18:
40439837-40439770
68
PGTB1_RAT
87-109
23
6
B:87-109
D:87-109
F:87-109
H:87-109
J:87-109
L:87-109
23
23
23
23
23
23
1.4
ENSRNOT00000004723
4
ENSRNOE00000033198
chr18:
40436689-40436538
152
PGTB1_RAT
110-160
51
6
B:110-160
D:110-160
F:110-160
H:110-160
J:110-160
L:110-160
51
51
51
51
51
51
1.5
ENSRNOT00000004723
5
ENSRNOE00000033220
chr18:
40435436-40435304
133
PGTB1_RAT
160-204
45
6
B:160-204
D:160-204
F:160-204
H:160-204
J:160-204
L:160-204
45
45
45
45
45
45
1.6
ENSRNOT00000004723
6
ENSRNOE00000033239
chr18:
40423076-40423031
46
PGTB1_RAT
205-220
16
6
B:205-220
D:205-220
F:205-220
H:205-220
J:205-220
L:205-220
16
16
16
16
16
16
1.7
ENSRNOT00000004723
7
ENSRNOE00000033263
chr18:
40418461-40418277
185
PGTB1_RAT
220-281
62
6
B:220-281
D:220-281
F:220-281
H:220-281
J:220-281
L:220-281
62
62
62
62
62
62
1.8
ENSRNOT00000004723
8
ENSRNOE00000033290
chr18:
40416042-40415934
109
PGTB1_RAT
282-318
37
6
B:282-318
D:282-318
F:282-318
H:282-318
J:282-318
L:282-318
37
37
37
37
37
37
1.9
ENSRNOT00000004723
9
ENSRNOE00000033312
chr18:
40410659-40410055
605
PGTB1_RAT
318-377
60
6
B:318-363
D:318-363
F:318-363
H:318-363
J:318-363
L:318-363
46
46
46
46
46
46
2.1
ENST00000256078
1
ENSE00001189804
chr12:
25403854-25403685
170
RASK_HUMAN
-
0
0
-
-
2.2a
ENST00000256078
2a
ENSE00000936617
chr12:
25398329-25398208
122
RASK_HUMAN
1-37
37
0
-
-
2.3
ENST00000256078
3
ENSE00001719809
chr12:
25380346-25380168
179
RASK_HUMAN
38-97
60
0
-
-
2.4
ENST00000256078
4
ENSE00001644818
chr12:
25378707-25378548
160
RASK_HUMAN
97-150
54
0
-
-
2.5b
ENST00000256078
5b
ENSE00001189807
chr12:
25368494-25368371
124
RASK_HUMAN
151-189
39
6
M:107-111
N:207-211
O:307-311
P:407-411
Q:507-511
R:607-611
5
5
5
5
5
5
2.6b
ENST00000256078
6b
ENSE00001740851
chr12:
25362845-25358182
4664
RASK_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1n4qa_ (A:)
1b: SCOP_d1n4qc_ (C:)
1c: SCOP_d1n4qe_ (E:)
1d: SCOP_d1n4qg_ (G:)
1e: SCOP_d1n4qi_ (I:)
1f: SCOP_d1n4qk_ (K:)
2a: SCOP_d1n4qb_ (B:)
2b: SCOP_d1n4qd_ (D:)
2c: SCOP_d1n4qf_ (F:)
2d: SCOP_d1n4qh_ (H:)
2e: SCOP_d1n4qj_ (J:)
2f: SCOP_d1n4ql_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Protein prenylyltransferase
(68)
Family
:
Protein prenylyltransferase
(68)
Protein domain
:
Protein farnesyltransferase alpha-subunit
(64)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(51)
1a
d1n4qa_
A:
1b
d1n4qc_
C:
1c
d1n4qe_
E:
1d
d1n4qg_
G:
1e
d1n4qi_
I:
1f
d1n4qk_
K:
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Protein prenyltransferases
(86)
Protein domain
:
Protein farnesyltransferase, beta-subunit
(63)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(50)
2a
d1n4qb_
B:
2b
d1n4qd_
D:
2c
d1n4qf_
F:
2d
d1n4qh_
H:
2e
d1n4qj_
J:
2f
d1n4ql_
L:
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1n4qA00 (A:55-368)
1b: CATH_1n4qE00 (E:55-368)
1c: CATH_1n4qG00 (G:55-368)
1d: CATH_1n4qI00 (I:55-368)
1e: CATH_1n4qK00 (K:55-368)
1f: CATH_1n4qC00 (C:55-368)
2a: CATH_1n4qB00 (B:18-363)
2b: CATH_1n4qD00 (D:18-363)
2c: CATH_1n4qF00 (F:18-363)
2d: CATH_1n4qH00 (H:18-363)
2e: CATH_1n4qJ00 (J:18-363)
2f: CATH_1n4qL00 (L:18-363)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.120, no name defined]
(62)
Norway rat (Rattus norvegicus)
(37)
1a
1n4qA00
A:55-368
1b
1n4qE00
E:55-368
1c
1n4qG00
G:55-368
1d
1n4qI00
I:55-368
1e
1n4qK00
K:55-368
1f
1n4qC00
C:55-368
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Norway rat (Rattus norvegicus)
(39)
2a
1n4qB00
B:18-363
2b
1n4qD00
D:18-363
2c
1n4qF00
F:18-363
2d
1n4qH00
H:18-363
2e
1n4qJ00
J:18-363
2f
1n4qL00
L:18-363
[
close CATH info
]
Pfam Domains
(3, 48)
Info
all PFAM domains
1a: PFAM_Prenyltrans_1n4qL01 (L:289-333)
1b: PFAM_Prenyltrans_1n4qL02 (L:289-333)
1c: PFAM_Prenyltrans_1n4qL03 (L:289-333)
1d: PFAM_Prenyltrans_1n4qL04 (L:289-333)
1e: PFAM_Prenyltrans_1n4qL05 (L:289-333)
1f: PFAM_Prenyltrans_1n4qL06 (L:289-333)
1g: PFAM_Prenyltrans_1n4qL07 (L:289-333)
1h: PFAM_Prenyltrans_1n4qL08 (L:289-333)
1i: PFAM_Prenyltrans_1n4qL09 (L:289-333)
1j: PFAM_Prenyltrans_1n4qL10 (L:289-333)
1k: PFAM_Prenyltrans_1n4qL11 (L:289-333)
1l: PFAM_Prenyltrans_1n4qL12 (L:289-333)
2a: PFAM_Prenyltrans_2_1n4qL13 (L:110-212)
2b: PFAM_Prenyltrans_2_1n4qL14 (L:110-212)
2c: PFAM_Prenyltrans_2_1n4qL15 (L:110-212)
2d: PFAM_Prenyltrans_2_1n4qL16 (L:110-212)
2e: PFAM_Prenyltrans_2_1n4qL17 (L:110-212)
2f: PFAM_Prenyltrans_2_1n4qL18 (L:110-212)
3a: PFAM_PPTA_1n4qK01 (K:258-288)
3b: PFAM_PPTA_1n4qK02 (K:258-288)
3c: PFAM_PPTA_1n4qK03 (K:258-288)
3d: PFAM_PPTA_1n4qK04 (K:258-288)
3e: PFAM_PPTA_1n4qK05 (K:258-288)
3f: PFAM_PPTA_1n4qK06 (K:258-288)
3g: PFAM_PPTA_1n4qK07 (K:258-288)
3h: PFAM_PPTA_1n4qK08 (K:258-288)
3i: PFAM_PPTA_1n4qK09 (K:258-288)
3j: PFAM_PPTA_1n4qK10 (K:258-288)
3k: PFAM_PPTA_1n4qK11 (K:258-288)
3l: PFAM_PPTA_1n4qK12 (K:258-288)
3m: PFAM_PPTA_1n4qK13 (K:258-288)
3n: PFAM_PPTA_1n4qK14 (K:258-288)
3o: PFAM_PPTA_1n4qK15 (K:258-288)
3p: PFAM_PPTA_1n4qK16 (K:258-288)
3q: PFAM_PPTA_1n4qK17 (K:258-288)
3r: PFAM_PPTA_1n4qK18 (K:258-288)
3s: PFAM_PPTA_1n4qK19 (K:258-288)
3t: PFAM_PPTA_1n4qK20 (K:258-288)
3u: PFAM_PPTA_1n4qK21 (K:258-288)
3v: PFAM_PPTA_1n4qK22 (K:258-288)
3w: PFAM_PPTA_1n4qK23 (K:258-288)
3x: PFAM_PPTA_1n4qK24 (K:258-288)
3y: PFAM_PPTA_1n4qK25 (K:258-288)
3z: PFAM_PPTA_1n4qK26 (K:258-288)
3aa: PFAM_PPTA_1n4qK27 (K:258-288)
3ab: PFAM_PPTA_1n4qK28 (K:258-288)
3ac: PFAM_PPTA_1n4qK29 (K:258-288)
3ad: PFAM_PPTA_1n4qK30 (K:258-288)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Prenyltrans
(49)
Rattus norvegicus (Rat)
(31)
1a
Prenyltrans-1n4qL01
L:289-333
1b
Prenyltrans-1n4qL02
L:289-333
1c
Prenyltrans-1n4qL03
L:289-333
1d
Prenyltrans-1n4qL04
L:289-333
1e
Prenyltrans-1n4qL05
L:289-333
1f
Prenyltrans-1n4qL06
L:289-333
1g
Prenyltrans-1n4qL07
L:289-333
1h
Prenyltrans-1n4qL08
L:289-333
1i
Prenyltrans-1n4qL09
L:289-333
1j
Prenyltrans-1n4qL10
L:289-333
1k
Prenyltrans-1n4qL11
L:289-333
1l
Prenyltrans-1n4qL12
L:289-333
Family
:
Prenyltrans_2
(47)
Rattus norvegicus (Rat)
(31)
2a
Prenyltrans_2-1n4qL13
L:110-212
2b
Prenyltrans_2-1n4qL14
L:110-212
2c
Prenyltrans_2-1n4qL15
L:110-212
2d
Prenyltrans_2-1n4qL16
L:110-212
2e
Prenyltrans_2-1n4qL17
L:110-212
2f
Prenyltrans_2-1n4qL18
L:110-212
Clan
:
no clan defined [family: PPTA]
(36)
Family
:
PPTA
(36)
Rattus norvegicus (Rat)
(31)
3a
PPTA-1n4qK01
K:258-288
3b
PPTA-1n4qK02
K:258-288
3c
PPTA-1n4qK03
K:258-288
3d
PPTA-1n4qK04
K:258-288
3e
PPTA-1n4qK05
K:258-288
3f
PPTA-1n4qK06
K:258-288
3g
PPTA-1n4qK07
K:258-288
3h
PPTA-1n4qK08
K:258-288
3i
PPTA-1n4qK09
K:258-288
3j
PPTA-1n4qK10
K:258-288
3k
PPTA-1n4qK11
K:258-288
3l
PPTA-1n4qK12
K:258-288
3m
PPTA-1n4qK13
K:258-288
3n
PPTA-1n4qK14
K:258-288
3o
PPTA-1n4qK15
K:258-288
3p
PPTA-1n4qK16
K:258-288
3q
PPTA-1n4qK17
K:258-288
3r
PPTA-1n4qK18
K:258-288
3s
PPTA-1n4qK19
K:258-288
3t
PPTA-1n4qK20
K:258-288
3u
PPTA-1n4qK21
K:258-288
3v
PPTA-1n4qK22
K:258-288
3w
PPTA-1n4qK23
K:258-288
3x
PPTA-1n4qK24
K:258-288
3y
PPTA-1n4qK25
K:258-288
3z
PPTA-1n4qK26
K:258-288
3aa
PPTA-1n4qK27
K:258-288
3ab
PPTA-1n4qK28
K:258-288
3ac
PPTA-1n4qK29
K:258-288
3ad
PPTA-1n4qK30
K:258-288
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (685 KB)
Header - Asym.Unit
Biol.Unit 1 (118 KB)
Header - Biol.Unit 1
Biol.Unit 2 (119 KB)
Header - Biol.Unit 2
Biol.Unit 3 (119 KB)
Header - Biol.Unit 3
Biol.Unit 4 (118 KB)
Header - Biol.Unit 4
Biol.Unit 5 (120 KB)
Header - Biol.Unit 5
Biol.Unit 6 (123 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1N4Q
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help