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1N4M
Biol. Unit 4
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Asym.Unit (130 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (66 KB)
Biol.Unit 4 (63 KB)
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(1)
Title
:
STRUCTURE OF RB TUMOR SUPPRESSOR BOUND TO THE TRANSACTIVATION DOMAIN OF E2F-2
Authors
:
C. Lee, J. H. Chang, H. S. Lee, Y. Cho
Date
:
31 Oct 02 (Deposition) - 07 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D,E (1x)
Biol. Unit 3: A,C,E (1x)
Biol. Unit 4: B,D (1x)
Keywords
:
Protein-Peptide Complex, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Lee, J. H. Chang, H. S. Lee, Y. Cho
Structural Basis For The Recognition Of The E2F Transactivation Domain By The Retinoblastoma Tumor Suppressor
Genes Dev. V. 16 3199 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(19, 19)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_019379 (A436K, chain B, )
02: VAR_010048 (K447Q, chain B, )
03: VAR_005576 (M457R, chain B, )
04: VAR_011580 (R500G, chain B, )
05: VAR_019380 (A525G, chain B, )
06: VAR_010049 (K530R, chain B, )
07: VAR_005578 (H549Y, chain B, )
08: VAR_005579 (S567L, chain B, )
09: VAR_051910 (L569F, chain B, )
10: VAR_005581 (V654E, chain B, )
11: VAR_010050 (L657P, chain B, )
12: VAR_005582 (R661W, chain B, )
13: VAR_005583 (L662P, chain B, )
14: VAR_005584 (H673P, chain B, )
15: VAR_005585 (Q685P, chain B, )
16: VAR_051911 (D697E, chain B, )
17: VAR_005586 (C706Y, chain B, )
18: VAR_005587 (C712R, chain B, )
19: VAR_034442 (E746G, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019379
Q
436
K
RB_HUMAN
Polymorphism
4151534
B
A
436
K
02
UniProt
VAR_010048
K
447
Q
RB_HUMAN
Disease (RB)
---
B
K
447
Q
03
UniProt
VAR_005576
M
457
R
RB_HUMAN
Disease (RB)
---
B
M
457
R
04
UniProt
VAR_011580
R
500
G
RB_HUMAN
Disease (RB)
---
B
R
500
G
05
UniProt
VAR_019380
A
525
G
RB_HUMAN
Polymorphism
4151539
B
A
525
G
06
UniProt
VAR_010049
K
530
R
RB_HUMAN
Disease (RB)
---
B
K
530
R
07
UniProt
VAR_005578
H
549
Y
RB_HUMAN
Disease (RB)
---
B
H
549
Y
08
UniProt
VAR_005579
S
567
L
RB_HUMAN
Disease (RB)
---
B
S
567
L
09
UniProt
VAR_051910
L
569
F
RB_HUMAN
Polymorphism
3092895
B
L
569
F
10
UniProt
VAR_005581
V
654
E
RB_HUMAN
Disease (RB)
---
B
V
654
E
11
UniProt
VAR_010050
L
657
P
RB_HUMAN
Disease (RB)
---
B
L
657
P
12
UniProt
VAR_005582
R
661
W
RB_HUMAN
Disease (RB)
---
B
R
661
W
13
UniProt
VAR_005583
L
662
P
RB_HUMAN
Disease (RB)
---
B
L
662
P
14
UniProt
VAR_005584
H
673
P
RB_HUMAN
Disease (RB)
---
B
H
673
P
15
UniProt
VAR_005585
Q
685
P
RB_HUMAN
Disease (RB)
---
B
Q
685
P
16
UniProt
VAR_051911
D
697
E
RB_HUMAN
Polymorphism
3092903
B
D
697
E
17
UniProt
VAR_005586
C
706
Y
RB_HUMAN
Disease (RB)
---
B
C
706
Y
18
UniProt
VAR_005587
C
712
R
RB_HUMAN
Disease (RB)
---
B
C
712
R
19
UniProt
VAR_034442
E
746
G
RB_HUMAN
Polymorphism
3092905
B
E
746
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1n4ma1 (A:380-581)
1b: SCOP_d1n4ma2 (A:643-785)
1c: SCOP_d1n4mb1 (B:380-581)
1d: SCOP_d1n4mb2 (B:643-785)
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(
)
(
)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Retinoblastoma tumor suppressor domains
(7)
Protein domain
:
Retinoblastoma tumor suppressor domains
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1n4ma1
A:380-581
1b
d1n4ma2
A:643-785
1c
d1n4mb1
B:380-581
1d
d1n4mb2
B:643-785
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1n4mA02 (A:564-785)
1b: CATH_1n4mB02 (B:564-785)
1c: CATH_1n4mB01 (B:380-563)
1d: CATH_1n4mA01 (A:380-563)
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(
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
1a
1n4mA02
A:564-785
1b
1n4mB02
B:564-785
1c
1n4mB01
B:380-563
1d
1n4mA01
A:380-563
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close CATH info
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_RB_A_1n4mB01 (B:380-573)
1b: PFAM_RB_A_1n4mB02 (B:380-573)
2a: PFAM_RB_B_1n4mB03 (B:645-766)
2b: PFAM_RB_B_1n4mB04 (B:645-766)
3a: PFAM_Rb_C_1n4mB05 (B:768-785)
3b: PFAM_Rb_C_1n4mB06 (B:768-785)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cyclin
(63)
Family
:
RB_A
(4)
Homo sapiens (Human)
(4)
1a
RB_A-1n4mB01
B:380-573
1b
RB_A-1n4mB02
B:380-573
Family
:
RB_B
(4)
Homo sapiens (Human)
(4)
2a
RB_B-1n4mB03
B:645-766
2b
RB_B-1n4mB04
B:645-766
Clan
:
no clan defined [family: Rb_C]
(5)
Family
:
Rb_C
(5)
Homo sapiens (Human)
(5)
3a
Rb_C-1n4mB05
B:768-785
3b
Rb_C-1n4mB06
B:768-785
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Asymmetric Unit 1
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Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (66 KB)
Header - Biol.Unit 3
Biol.Unit 4 (63 KB)
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