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1N47
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
ISOLECTIN B4 FROM VICIA VILLOSA IN COMPLEX WITH THE TN ANTIGEN
Authors
:
A. Babino, D. Tello, A. Rojas, S. Bay, E. Osinaga, P. M. Alzari
Date
:
30 Oct 02 (Deposition) - 25 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Cancer Antigen, Vicia Villosa Lectin, Glycoprotein Tn-Binding Protein, Carbohydrate Recognition, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Babino, D. Tello, A. Rojas, S. Bay, E. Osinaga, P. M. Alzari
The Crystal Structure Of A Plant Lectin In Complex With The Tn Antigen
Febs Lett. V. 536 106 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5a: O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GAL... (TNRa)
5b: O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GAL... (TNRb)
5c: O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GAL... (TNRc)
5d: O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GAL... (TNRd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
3
MN
4
Ligand/Ion
MANGANESE (II) ION
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
TNR
4
Ligand/Ion
O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSYL)-L-SERINE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:61 , GLU A:201 , FUC A:302 , NAG A:303
BINDING SITE FOR RESIDUE NAG A 301
02
AC2
SOFTWARE
NAG A:301 , NAG A:303 , PRO B:13 , ASN B:14
BINDING SITE FOR RESIDUE FUC A 302
03
AC3
SOFTWARE
NAG A:301 , FUC A:302
BINDING SITE FOR RESIDUE NAG A 303
04
AC4
SOFTWARE
ASN B:61 , GLU B:201 , FUC B:302 , NAG B:303
BINDING SITE FOR RESIDUE NAG B 301
05
AC5
SOFTWARE
PRO A:13 , ASN A:14 , NAG B:301 , NAG B:303
BINDING SITE FOR RESIDUE FUC B 302
06
AC6
SOFTWARE
NAG B:301 , FUC B:302
BINDING SITE FOR RESIDUE NAG B 303
07
AC7
SOFTWARE
ASN C:61 , GLU C:201 , FUC C:302 , NAG C:303
BINDING SITE FOR RESIDUE NAG C 301
08
AC8
SOFTWARE
NAG C:301 , NAG C:303 , ASN D:14
BINDING SITE FOR RESIDUE FUC C 302
09
AC9
SOFTWARE
NAG C:301 , FUC C:302
BINDING SITE FOR RESIDUE NAG C 303
10
BC1
SOFTWARE
ASN D:61 , GLU D:201 , FUC D:302 , NAG D:303
BINDING SITE FOR RESIDUE NAG D 301
11
BC2
SOFTWARE
PRO C:13 , ASN C:14 , NAG D:301
BINDING SITE FOR RESIDUE FUC D 302
12
BC3
SOFTWARE
NAG D:301
BINDING SITE FOR RESIDUE NAG D 303
13
BC4
SOFTWARE
ASP A:125 , TYR A:127 , ASN A:129 , ASP A:132 , HOH A:1403
BINDING SITE FOR RESIDUE CA A 252
14
BC5
SOFTWARE
GLU A:123 , ASP A:125 , ASP A:132 , HIS A:137 , HOH A:1407 , HOH A:1408
BINDING SITE FOR RESIDUE MN A 253
15
BC6
SOFTWARE
ASP B:125 , TYR B:127 , ASN B:129 , ASP B:132 , HOH B:2405 , HOH B:2410
BINDING SITE FOR RESIDUE CA B 252
16
BC7
SOFTWARE
GLU B:123 , ASP B:125 , ASP B:132 , HIS B:137 , HOH B:2409 , HOH B:2415
BINDING SITE FOR RESIDUE MN B 253
17
BC8
SOFTWARE
ASP C:125 , TYR C:127 , ASN C:129 , ASP C:132 , HOH C:3402 , HOH C:3414
BINDING SITE FOR RESIDUE CA C 252
18
BC9
SOFTWARE
GLU C:123 , ASP C:125 , ASP C:132 , HIS C:137 , HOH C:3413 , HOH C:3418
BINDING SITE FOR RESIDUE MN C 253
19
CC1
SOFTWARE
ASP D:125 , TYR D:127 , ASN D:129 , ASP D:132 , HOH D:4413
BINDING SITE FOR RESIDUE CA D 252
20
CC2
SOFTWARE
GLU D:123 , ASP D:125 , ASP D:132 , HIS D:137 , HOH D:4411 , HOH D:4414
BINDING SITE FOR RESIDUE MN D 253
21
CC3
SOFTWARE
ASP A:85 , GLY A:103 , TYR A:127 , ASN A:129 , LEU A:213 , ASN A:214 , VAL A:217
BINDING SITE FOR RESIDUE TNR A 1401
22
CC4
SOFTWARE
ASP B:85 , GLY B:103 , TYR B:127 , ASN B:129 , GLY B:212 , LEU B:213 , ASN B:214 , VAL B:217
BINDING SITE FOR RESIDUE TNR B 2401
23
CC5
SOFTWARE
ASN A:134 , ASP C:85 , GLY C:102 , GLY C:103 , TYR C:127 , ASN C:129 , GLY C:212 , LEU C:213 , ASN C:214 , VAL C:217 , HOH C:3409
BINDING SITE FOR RESIDUE TNR C 3401
24
CC6
SOFTWARE
GLU B:146 , ASP D:85 , GLY D:102 , GLY D:103 , ASN D:129 , GLY D:212 , LEU D:213 , ASN D:214 , HOH D:4403
BINDING SITE FOR RESIDUE TNR D 4401
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:120-126,B:120-126,C:120-126,D:12...)
2: LECTIN_LEGUME_ALPHA (A:199-208,B:199-208,C:199-208,D:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC_VICVI
108-114
4
A:120-126
B:120-126
C:120-126
D:120-126
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LEC_VICVI
163-172
4
A:199-208
B:199-208
C:199-208
D:199-208
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1n47a_ (A:)
1b: SCOP_d1n47b_ (B:)
1c: SCOP_d1n47c_ (C:)
1d: SCOP_d1n47d_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]
(1)
1a
d1n47a_
A:
1b
d1n47b_
B:
1c
d1n47c_
C:
1d
d1n47d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1n47A00 (A:1-233)
1b: CATH_1n47B00 (B:1-233)
1c: CATH_1n47C00 (C:1-233)
1d: CATH_1n47D00 (D:1-233)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Hairy vetch (Vicia villosa)
(1)
1a
1n47A00
A:1-233
1b
1n47B00
B:1-233
1c
1n47C00
C:1-233
1d
1n47D00
D:1-233
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
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