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1N3B
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DEPHOSPHOCOENZYME A KINASE FROM ESCHERICHIA COLI
Authors
:
N. O'Toole, J. A. R. G. Barbosa, Y. Li, L. -W. Hung, A. Matte, M. Cygler, Mo Kingston Bacterial Structural Genomics Initiative (Bsgi)
Date
:
25 Oct 02 (Deposition) - 28 Jan 03 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Trimer, P-Loop, Alpha/Beta, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Structural Genomics, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. O'Toole, J. A. R. G. Barbosa, Y. Li, L. -W. Hung, A. Matte, M. Cygler
Crystal Structure Of A Trimeric Form Of Dephosphocoenzyme A Kinase From Escherichia Coli
Protein Sci. V. 12 327 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:11 , GLY A:12 , SER A:13 , GLY A:14 , LYS A:15 , ARG A:144 , HOH A:528 , HOH A:604
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
ILE B:11 , GLY B:12 , SER B:13 , GLY B:14 , LYS B:15 , ARG B:144 , HOH B:563 , HOH B:587
BINDING SITE FOR RESIDUE SO4 B 502
03
AC3
SOFTWARE
GLY C:12 , SER C:13 , GLY C:14 , LYS C:15 , ARG C:144 , HOH C:596
BINDING SITE FOR RESIDUE SO4 C 503
04
AC4
SOFTWARE
SER A:119 , TYR A:121 , LYS A:122 , SER B:119 , TYR B:121 , LYS B:122 , HOH B:554 , SER C:119 , TYR C:121 , LYS C:122
BINDING SITE FOR RESIDUE SO4 C 504
05
AC5
SOFTWARE
ARG A:126 , HIS A:192 , HOH A:576
BINDING SITE FOR RESIDUE SO4 A 505
06
AC6
SOFTWARE
ARG B:126 , HIS B:192
BINDING SITE FOR RESIDUE SO4 B 506
07
AC7
SOFTWARE
ARG C:126 , HIS C:192 , HOH C:653
BINDING SITE FOR RESIDUE SO4 C 507
08
AC8
SOFTWARE
HOH B:680 , GLN C:93 , THR C:96 , GLN C:97 , TRP C:110
BINDING SITE FOR RESIDUE SO4 C 508
09
AC9
SOFTWARE
ALA A:157 , GLN B:93 , GLN B:97 , TRP B:110
BINDING SITE FOR RESIDUE SO4 B 509
10
BC1
SOFTWARE
GLN A:93 , THR A:96 , GLN A:97 , TRP A:110 , LYS A:123 , HOH C:650
BINDING SITE FOR RESIDUE SO4 A 510
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: DPCK (A:4-200,B:4-200,C:4-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPCK
PS51219
Dephospho-CoA kinase (DPCK) domain profile.
COAE_ECOLI
4-200
3
A:4-200
B:4-200
C:4-200
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1n3ba_ (A:)
1b: SCOP_d1n3bb_ (B:)
1c: SCOP_d1n3bc_ (C:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Dephospho-CoA kinase
(8)
Escherichia coli [TaxId: 562]
(5)
1a
d1n3ba_
A:
1b
d1n3bb_
B:
1c
d1n3bc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1n3bB00 (B:2-206)
1b: CATH_1n3bC00 (C:2-206)
1c: CATH_1n3bA00 (A:2-204)
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Classes
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562.
(54)
1a
1n3bB00
B:2-206
1b
1n3bC00
C:2-206
1c
1n3bA00
A:2-204
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_CoaE_1n3bC01 (C:3-181)
1b: PFAM_CoaE_1n3bC02 (C:3-181)
1c: PFAM_CoaE_1n3bC03 (C:3-181)
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)
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)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
CoaE
(7)
Escherichia coli (strain K12)
(5)
1a
CoaE-1n3bC01
C:3-181
1b
CoaE-1n3bC02
C:3-181
1c
CoaE-1n3bC03
C:3-181
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Asymmetric Unit 1
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Asym.Unit (109 KB)
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