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1N2Z
Biol. Unit 4
Info
Asym.Unit (100 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (92 KB)
Biol.Unit 4 (92 KB)
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(1)
Title
:
2.0 ANGSTROM STRUCTURE OF BTUF, THE VITAMIN B12 BINDING PROTEIN OF E. COLI
Authors
:
E. L. Borths, K. P. Locher, A. T. Lee, D. C. Rees
Date
:
24 Oct 02 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A,B (1x)
Keywords
:
Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. L. Borths, K. P. Locher, A. T. Lee, D. C. Rees
The Structure Of Escherichia Coli Btuf And Binding To Its Cognate Atp Binding Cassette Transporter
Proc. Natl. Acad. Sci. Usa V. 99 16642 2002
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
1s: CADMIUM ION (CDs)
1t: CADMIUM ION (CDt)
1u: CADMIUM ION (CDu)
1v: CADMIUM ION (CDv)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: CO-CYANOCOBALAMIN (CNCa)
3b: CO-CYANOCOBALAMIN (CNCb)
4a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CNC
1
Ligand/Ion
CO-CYANOCOBALAMIN
4
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:245 , CL A:426 , CL A:427 , CL A:429 , HOH A:443 , HOH A:459
BINDING SITE FOR RESIDUE CD A 402
02
AC2
SOFTWARE
ASP A:52 , ASP A:242 , ARG A:246 , HOH A:431 , HOH A:442
BINDING SITE FOR RESIDUE CD A 403
03
AC3
SOFTWARE
THR A:215 , CL A:428 , CL A:429 , HOH A:443 , HOH A:459 , HOH A:515
BINDING SITE FOR RESIDUE CD A 404
04
AC4
SOFTWARE
ASP A:266 , HOH A:445 , GLU B:181 , GLU B:186 , LYS B:190
BINDING SITE FOR RESIDUE CD A 405
05
AC5
SOFTWARE
THR B:215 , GLU B:245 , CL B:424 , HOH B:430 , HOH B:438 , HOH B:481
BINDING SITE FOR RESIDUE CD B 406
06
AC6
SOFTWARE
ASP B:52 , ASP B:242 , ARG B:246 , CL B:425 , HOH B:426
BINDING SITE FOR RESIDUE CD B 407
07
AC7
SOFTWARE
THR B:215 , HOH B:438 , HOH B:468 , HOH B:481
BINDING SITE FOR RESIDUE CD B 408
08
AC8
SOFTWARE
HOH A:434 , GLU B:173 , HOH B:519 , HOH B:587
BINDING SITE FOR RESIDUE CD B 409
09
AC9
SOFTWARE
TRP A:243 , ARG A:250 , GLN B:149 , GLN B:256 , HOH B:432
BINDING SITE FOR RESIDUE CD B 410
10
BC1
SOFTWARE
ARG A:86 , ASP B:108 , ALA B:109 , HOH B:429 , HOH B:482
BINDING SITE FOR RESIDUE CD A 411
11
BC2
SOFTWARE
ASP A:108 , ALA A:109 , HOH A:436 , ARG B:86
BINDING SITE FOR RESIDUE CD A 412
12
BC3
SOFTWARE
ASP A:266 , HOH A:445 , HOH A:475 , HOH A:562
BINDING SITE FOR RESIDUE CD A 413
13
BC4
SOFTWARE
GLU A:181 , LYS A:190 , ARG B:92
BINDING SITE FOR RESIDUE CD A 414
14
BC5
SOFTWARE
ASP A:130 , HOH A:504
BINDING SITE FOR RESIDUE CD A 415
15
BC6
SOFTWARE
ASP B:219 , CD B:422
BINDING SITE FOR RESIDUE CD B 416
16
BC7
SOFTWARE
ASP A:219 , HOH A:484 , HOH A:528 , ASP B:266
BINDING SITE FOR RESIDUE CD A 417
17
BC8
SOFTWARE
HOH A:499 , HOH B:507
BINDING SITE FOR RESIDUE CD A 418
18
BC9
SOFTWARE
GLU A:91 , HOH A:603
BINDING SITE FOR RESIDUE CD A 419
19
CC1
SOFTWARE
HOH B:529 , HOH B:574 , HOH B:597
BINDING SITE FOR RESIDUE CD B 420
20
CC2
SOFTWARE
HOH A:513
BINDING SITE FOR RESIDUE CD A 421
21
CC3
SOFTWARE
ASP B:191 , ARG B:207 , CD B:416
BINDING SITE FOR RESIDUE CD B 422
22
CC4
SOFTWARE
GLU A:173 , HOH A:537 , ARG B:86 , GLU B:91 , HOH B:528
BINDING SITE FOR RESIDUE CD B 423
23
CC5
SOFTWARE
GLU B:245 , CNC B:401 , CD B:406
BINDING SITE FOR RESIDUE CL B 424
24
CC6
SOFTWARE
TYR B:50 , ARG B:246 , CD B:407
BINDING SITE FOR RESIDUE CL B 425
25
CC7
SOFTWARE
GLU A:245 , CNC A:400 , CD A:402 , CL A:427 , HOH A:621
BINDING SITE FOR RESIDUE CL A 426
26
CC8
SOFTWARE
CNC A:400 , CD A:402 , CL A:426 , CL A:429
BINDING SITE FOR RESIDUE CL A 427
27
CC9
SOFTWARE
GLN A:161 , GLY A:163 , ILE A:214 , THR A:215 , CD A:404
BINDING SITE FOR RESIDUE CL A 428
28
DC1
SOFTWARE
CD A:402 , CD A:404 , CL A:427 , HOH A:459
BINDING SITE FOR RESIDUE CL A 429
29
DC2
SOFTWARE
PRO A:31 , ALA A:32 , TYR A:50 , TRP A:66 , TRP A:85 , GLY A:87 , GLY A:88 , PHE A:168 , TRP A:196 , ASP A:242 , GLU A:245 , ARG A:246 , CL A:426 , CL A:427 , HOH A:433 , HOH A:455 , HOH A:490 , HOH A:496 , HOH A:503 , HOH A:512 , HOH A:614 , HOH A:620 , HOH A:622 , HOH A:623 , HOH A:624 , HOH A:625 , HOH A:627
BINDING SITE FOR RESIDUE CNC A 400
30
DC3
SOFTWARE
PRO B:31 , ALA B:32 , TYR B:50 , TRP B:66 , TRP B:85 , GLY B:87 , GLY B:88 , PHE B:168 , TRP B:196 , SER B:241 , ASP B:242 , GLU B:245 , ARG B:246 , CL B:424 , HOH B:431 , HOH B:455 , HOH B:459 , HOH B:472 , HOH B:526 , HOH B:530 , HOH B:599 , HOH B:600 , HOH B:601
BINDING SITE FOR RESIDUE CNC B 401
31
DC4
SOFTWARE
PRO A:124 , TRP A:125 , PRO B:124 , TRP B:125
BINDING SITE FOR RESIDUE PG4 A 430
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FE_B12_PBP (A:25-266,B:25-266)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FE_B12_PBP
PS50983
Iron siderophore/cobalamin periplasmic-binding domain profile.
BTUF_ECOLI
25-266
2
A:25-266
B:25-266
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1n2za_ (A:)
1b: SCOP_d1n2zb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Helical backbone metal receptor
(102)
Family
:
TroA-like
(17)
Protein domain
:
Vitamin B12 binding protein BtuF
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d1n2za_
A:
1b
d1n2zb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1n2zA02 (A:141-266)
1b: CATH_1n2zA01 (A:22-140)
1c: CATH_1n2zB01 (B:22-140)
1d: CATH_1n2zB02 (B:141-266)
View:
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(
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(
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nitrogenase molybdenum iron protein domain
(45)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1n2zA02
A:141-266
1b
1n2zA01
A:22-140
1c
1n2zB01
B:22-140
1d
1n2zB02
B:141-266
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
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