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1N2L
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COVALENT INTERMEDIATE OF ENDOGENOUS HUMAN ARYLSULFATASE A
Authors
:
M. Chruszcz, P. Laidler, M. Monkiewicz, E. Ortlund, L. Lebioda, K. Lewi
Date
:
23 Oct 02 (Deposition) - 23 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Phosphate Ester Hydrolysis, Lysosomal Enzyme, Modified Formylglycine, Inhibition, Metal Ion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Chruszcz, P. Laidler, M. Monkiewicz, E. Ortlund, L. Lebioda, K. Lewinski
Crystal Structure Of A Covalent Intermediate Of Endogenous Human Arylsulfatase A.
J. Inorg. Biochem. V. 96 386 2003
[
close entry info
]
Hetero Components
(4, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 2-AMINO-3-HYDROXY-3-PHOSPHONOOXY-P... (FGPa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
FGP
1
Mod. Amino Acid
2-AMINO-3-HYDROXY-3-PHOSPHONOOXY-PROPIONIC ACID
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:144 , ALA A:183 , ASN A:184 , PHE A:204 , NAG A:602
BINDING SITE FOR RESIDUE NAG A 601
2
AC2
SOFTWARE
NAG A:601
BINDING SITE FOR RESIDUE NAG A 602
3
AC3
SOFTWARE
GLN A:157 , ASN A:158
BINDING SITE FOR RESIDUE NDG A 650
4
AC4
SOFTWARE
ASP A:29 , ASP A:30 , FGP A:69 , ASP A:281 , ASN A:282
BINDING SITE FOR RESIDUE CA A 600
[
close Site info
]
SAPs(SNPs)/Variants
(104, 104)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_054165 (D29N, chain A, )
002: VAR_054166 (D30H, chain A, )
003: VAR_054167 (G32S, chain A, )
004: VAR_067414 (L52P, chain A, )
005: VAR_054168 (L68P, chain A, )
006: VAR_007243 (L76P, chain A, )
007: VAR_007244 (P82L, chain A, )
008: VAR_007245 (R84Q, chain A, )
009: VAR_054169 (R84W, chain A, )
010: VAR_007246 (G86D, chain A, )
011: VAR_054170 (P94A, chain A, )
012: VAR_007247 (S95N, chain A, )
013: VAR_007248 (S96F, chain A, )
014: VAR_007249 (S96L, chain A, )
015: VAR_007250 (G99D, chain A, )
016: VAR_054171 (G99V, chain A, )
017: VAR_007251 (G119R, chain A, )
018: VAR_007252 (G122S, chain A, )
019: VAR_007253 (L135P, chain A, )
020: VAR_007254 (P136L, chain A, )
021: VAR_054172 (P136S, chain A, )
022: VAR_067415 (H138D, chain A, )
023: VAR_054174 (R143G, chain A, )
024: VAR_054175 (P148L, chain A, )
025: VAR_007255 (D152Y, chain A, )
026: VAR_054176 (Q153H, chain A, )
027: VAR_007256 (G154D, chain A, )
028: VAR_054177 (P155L, chain A, )
029: VAR_007257 (P155R, chain A, )
030: VAR_054178 (C156R, chain A, )
031: VAR_007258 (P167R, chain A, )
032: VAR_007259 (D169N, chain A, )
033: VAR_007260 (C172Y, chain A, )
034: VAR_007261 (I179S, chain A, )
035: VAR_054179 (L181Q, chain A, )
036: VAR_054180 (Q190H, chain A, )
037: VAR_054181 (P191T, chain A, )
038: VAR_007262 (W193C, chain A, )
039: VAR_007263 (Y201C, chain A, )
040: VAR_054182 (A212P, chain A, )
041: VAR_007264 (A212V, chain A, )
042: VAR_054183 (R217H, chain A, )
043: VAR_054184 (F219V, chain A, )
044: VAR_007265 (A224V, chain A, )
045: VAR_054185 (H227Y, chain A, )
046: VAR_007266 (P231T, chain A, )
047: VAR_007267 (R244C, chain A, )
048: VAR_007268 (R244H, chain A, )
049: VAR_007269 (G245R, chain A, )
050: VAR_054186 (F247S, chain A, )
051: VAR_007270 (S250Y, chain A, )
052: VAR_054187 (E253K, chain A, )
053: VAR_054188 (D255H, chain A, )
054: VAR_007271 (T274M, chain A, )
055: VAR_054189 (D281Y, chain A, )
056: VAR_054190 (N282S, chain A, )
057: VAR_054191 (T286P, chain A, )
058: VAR_007272 (R288C, chain A, )
059: VAR_054192 (R288H, chain A, )
060: VAR_054193 (G293D, chain A, )
061: VAR_054194 (G293S, chain A, )
062: VAR_054195 (C294Y, chain A, )
063: VAR_007273 (S295Y, chain A, )
064: VAR_054196 (L298S, chain A, )
065: VAR_008132 (C300F, chain A, )
066: VAR_054197 (K302N, chain A, )
067: VAR_067416 (T304M, chain A, )
068: VAR_054198 (Y306H, chain A, )
069: VAR_067417 (E307K, chain A, )
070: VAR_054199 (G308D, chain A, )
071: VAR_054200 (G308V, chain A, )
072: VAR_007274 (G309S, chain A, )
073: VAR_007275 (R311Q, chain A, )
074: VAR_054201 (E312D, chain A, )
075: VAR_007276 (A314T, chain A, )
076: VAR_054202 (G325S, chain A, )
077: VAR_054203 (T327I, chain A, )
078: VAR_007277 (D335V, chain A, )
079: VAR_007278 (N350S, chain A, )
080: VAR_018838 (F356V, chain A, )
081: VAR_007279 (K367N, chain A, )
082: VAR_007280 (R370Q, chain A, )
083: VAR_007281 (R370W, chain A, )
084: VAR_054204 (Y376N, chain A, )
085: VAR_007282 (P377L, chain A, )
086: VAR_054205 (D381E, chain A, )
087: VAR_007283 (E382K, chain A, )
088: VAR_007284 (R384C, chain A, )
089: VAR_007285 (R390Q, chain A, )
090: VAR_007286 (R390W, chain A, )
091: VAR_007287 (T391S, chain A, )
092: VAR_007288 (H397Y, chain A, )
093: VAR_067418 (S406G, chain A, )
094: VAR_054206 (T408I, chain A, )
095: VAR_054207 (T409I, chain A, )
096: VAR_008133 (P425T, chain A, )
097: VAR_007291 (P426L, chain A, )
098: VAR_054208 (L428P, chain A, )
099: VAR_054209 (Y429S, chain A, )
100: VAR_018839 (N440S, chain A, )
101: VAR_007292 (A464V, chain A, )
102: VAR_054210 (A469G, chain A, )
103: VAR_054211 (C489G, chain A, )
104: VAR_007293 (R496H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_054165
D
29
N
ARSA_HUMAN
Disease (MLD)
199476346
A
D
29
N
002
UniProt
VAR_054166
D
30
H
ARSA_HUMAN
Disease (MLD)
199476340
A
D
30
H
003
UniProt
VAR_054167
G
32
S
ARSA_HUMAN
Disease (MLD)
199476350
A
G
32
S
004
UniProt
VAR_067414
L
52
P
ARSA_HUMAN
Disease (MLD)
199476357
A
L
52
P
005
UniProt
VAR_054168
L
68
P
ARSA_HUMAN
Disease (MLD)
199476351
A
L
68
P
006
UniProt
VAR_007243
L
76
P
ARSA_HUMAN
Polymorphism
199476362
A
L
76
P
007
UniProt
VAR_007244
P
82
L
ARSA_HUMAN
Disease (MLD)
6151411
A
P
82
L
008
UniProt
VAR_007245
R
84
Q
ARSA_HUMAN
Disease (MLD)
74315458
A
R
84
Q
009
UniProt
VAR_054169
R
84
W
ARSA_HUMAN
Disease (MLD)
199476352
A
R
84
W
010
UniProt
VAR_007246
G
86
D
ARSA_HUMAN
Disease (MLD)
74315460
A
G
86
D
011
UniProt
VAR_054170
P
94
A
ARSA_HUMAN
Disease (MLD)
199476353
A
P
94
A
012
UniProt
VAR_007247
S
95
N
ARSA_HUMAN
Disease (MLD)
199476363
A
S
95
N
013
UniProt
VAR_007248
S
96
F
ARSA_HUMAN
Disease (MLD)
74315456
A
S
96
F
014
UniProt
VAR_007249
S
96
L
ARSA_HUMAN
Disease (MLD)
199476371
A
S
96
L
015
UniProt
VAR_007250
G
99
D
ARSA_HUMAN
Disease (MLD)
74315455
A
G
99
D
016
UniProt
VAR_054171
G
99
V
ARSA_HUMAN
Disease (MLD)
74315455
A
G
99
V
017
UniProt
VAR_007251
G
119
R
ARSA_HUMAN
Disease (MLD)
199476364
A
G
119
R
018
UniProt
VAR_007252
G
122
S
ARSA_HUMAN
Disease (MLD)
74315461
A
G
122
S
019
UniProt
VAR_007253
L
135
P
ARSA_HUMAN
Disease (MLD)
121434215
A
L
135
P
020
UniProt
VAR_007254
P
136
L
ARSA_HUMAN
Disease (MLD)
74315462
A
P
136
L
021
UniProt
VAR_054172
P
136
S
ARSA_HUMAN
Disease (MLD)
60504011
A
P
136
S
022
UniProt
VAR_067415
H
138
D
ARSA_HUMAN
Disease (MLD)
199476358
A
H
138
D
023
UniProt
VAR_054174
R
143
G
ARSA_HUMAN
Disease (MLD)
199476373
A
R
143
G
024
UniProt
VAR_054175
P
148
L
ARSA_HUMAN
Disease (MLD)
199476375
A
P
148
L
025
UniProt
VAR_007255
D
152
Y
ARSA_HUMAN
Disease (MLD)
199476365
A
D
152
Y
026
UniProt
VAR_054176
Q
153
H
ARSA_HUMAN
Disease (MLD)
199476377
A
Q
153
H
027
UniProt
VAR_007256
G
154
D
ARSA_HUMAN
Disease (MLD)
74315463
A
G
154
D
028
UniProt
VAR_054177
P
155
L
ARSA_HUMAN
Disease (MLD)
74315464
A
P
155
L
029
UniProt
VAR_007257
P
155
R
ARSA_HUMAN
Disease (MLD)
74315464
A
P
155
R
030
UniProt
VAR_054178
C
156
R
ARSA_HUMAN
Disease (MLD)
199476348
A
C
156
R
031
UniProt
VAR_007258
P
167
R
ARSA_HUMAN
Disease (MLD)
74315465
A
P
167
R
032
UniProt
VAR_007259
D
169
N
ARSA_HUMAN
Disease (MLD)
74315466
A
D
169
N
033
UniProt
VAR_007260
C
172
Y
ARSA_HUMAN
Disease (MLD)
199476381
A
C
172
Y
034
UniProt
VAR_007261
I
179
S
ARSA_HUMAN
Disease (MLD)
74315457
A
I
179
S
035
UniProt
VAR_054179
L
181
Q
ARSA_HUMAN
Disease (MLD)
199476378
A
L
181
Q
036
UniProt
VAR_054180
Q
190
H
ARSA_HUMAN
Disease (MLD)
199476372
A
Q
190
H
037
UniProt
VAR_054181
P
191
T
ARSA_HUMAN
Disease (MLD)
199476374
A
P
191
T
038
UniProt
VAR_007262
W
193
C
ARSA_HUMAN
Polymorphism
6151415
A
W
193
C
039
UniProt
VAR_007263
Y
201
C
ARSA_HUMAN
Disease (MLD)
199476345
A
Y
201
C
040
UniProt
VAR_054182
A
212
P
ARSA_HUMAN
Disease (MLD)
199476341
A
A
212
P
041
UniProt
VAR_007264
A
212
V
ARSA_HUMAN
Disease (MLD)
74315467
A
A
212
V
042
UniProt
VAR_054183
R
217
H
ARSA_HUMAN
Disease (MLD)
148403406
A
R
217
H
043
UniProt
VAR_054184
F
219
V
ARSA_HUMAN
Disease (MLD)
199476383
A
F
219
V
044
UniProt
VAR_007265
A
224
V
ARSA_HUMAN
Disease (MLD)
74315468
A
A
224
V
045
UniProt
VAR_054185
H
227
Y
ARSA_HUMAN
Disease (MLD)
199476354
A
H
227
Y
046
UniProt
VAR_007266
P
231
T
ARSA_HUMAN
Disease (MLD)
74315469
A
P
231
T
047
UniProt
VAR_007267
R
244
C
ARSA_HUMAN
Disease (MLD)
74315470
A
R
244
C
048
UniProt
VAR_007268
R
244
H
ARSA_HUMAN
Disease (MLD)
199476366
A
R
244
H
049
UniProt
VAR_007269
G
245
R
ARSA_HUMAN
Disease (MLD)
74315471
A
G
245
R
050
UniProt
VAR_054186
F
247
S
ARSA_HUMAN
Disease (MLD)
199476384
A
F
247
S
051
UniProt
VAR_007270
S
250
Y
ARSA_HUMAN
Disease (MLD)
199476367
A
S
250
Y
052
UniProt
VAR_054187
E
253
K
ARSA_HUMAN
Disease (MLD)
74315483
A
E
253
K
053
UniProt
VAR_054188
D
255
H
ARSA_HUMAN
Disease (MLD)
80338819
A
D
255
H
054
UniProt
VAR_007271
T
274
M
ARSA_HUMAN
Disease (MLD)
74315472
A
T
274
M
055
UniProt
VAR_054189
D
281
Y
ARSA_HUMAN
Disease (MLD)
199476386
A
D
281
Y
056
UniProt
VAR_054190
N
282
S
ARSA_HUMAN
Disease (MLD)
199476342
A
N
282
S
057
UniProt
VAR_054191
T
286
P
ARSA_HUMAN
Disease (MLD)
28940894
A
T
286
P
058
UniProt
VAR_007272
R
288
C
ARSA_HUMAN
Disease (MLD)
74315473
A
R
288
C
059
UniProt
VAR_054192
R
288
H
ARSA_HUMAN
Disease (MLD)
199476355
A
R
288
H
060
UniProt
VAR_054193
G
293
D
ARSA_HUMAN
Disease (MLD)
199476387
A
G
293
D
061
UniProt
VAR_054194
G
293
S
ARSA_HUMAN
Disease (MLD)
199476349
A
G
293
S
062
UniProt
VAR_054195
C
294
Y
ARSA_HUMAN
Disease (MLD)
199476347
A
C
294
Y
063
UniProt
VAR_007273
S
295
Y
ARSA_HUMAN
Disease (MLD)
74315474
A
S
295
Y
064
UniProt
VAR_054196
L
298
S
ARSA_HUMAN
Disease (MLD)
199476389
A
L
298
S
065
UniProt
VAR_008132
C
300
F
ARSA_HUMAN
Disease (MLD)
74315484
A
C
300
F
066
UniProt
VAR_054197
K
302
N
ARSA_HUMAN
Disease (MLD)
199476343
A
K
302
N
067
UniProt
VAR_067416
T
304
M
ARSA_HUMAN
Disease (MLD)
199476359
A
T
304
M
068
UniProt
VAR_054198
Y
306
H
ARSA_HUMAN
Disease (MLD)
199476379
A
Y
306
H
069
UniProt
VAR_067417
E
307
K
ARSA_HUMAN
Disease (MLD)
199476360
A
E
307
K
070
UniProt
VAR_054199
G
308
D
ARSA_HUMAN
Disease (MLD)
199476356
A
G
308
D
071
UniProt
VAR_054200
G
308
V
ARSA_HUMAN
Disease (MLD)
199476356
A
G
308
V
072
UniProt
VAR_007274
G
309
S
ARSA_HUMAN
Disease (MLD)
74315459
A
G
309
S
073
UniProt
VAR_007275
R
311
Q
ARSA_HUMAN
Disease (MLD)
199476382
A
R
311
Q
074
UniProt
VAR_054201
E
312
D
ARSA_HUMAN
Disease (MLD)
199476390
A
E
312
D
075
UniProt
VAR_007276
A
314
T
ARSA_HUMAN
Disease (MLD)
199476368
A
A
314
T
076
UniProt
VAR_054202
G
325
S
ARSA_HUMAN
Disease (MLD)
148092995
A
G
325
S
077
UniProt
VAR_054203
T
327
I
ARSA_HUMAN
Disease (MLD)
---
A
T
327
I
078
UniProt
VAR_007277
D
335
V
ARSA_HUMAN
Disease (MLD)
74315475
A
D
335
V
079
UniProt
VAR_007278
N
350
S
ARSA_HUMAN
Polymorphism
2071421
A
N
350
S
080
UniProt
VAR_018838
F
356
V
ARSA_HUMAN
Polymorphism
6151422
A
F
356
V
081
UniProt
VAR_007279
K
367
N
ARSA_HUMAN
Disease (MLD)
199476369
A
K
367
N
082
UniProt
VAR_007280
R
370
Q
ARSA_HUMAN
Disease (MLD)
74315477
A
R
370
Q
083
UniProt
VAR_007281
R
370
W
ARSA_HUMAN
Disease (MLD)
74315476
A
R
370
W
084
UniProt
VAR_054204
Y
376
N
ARSA_HUMAN
Disease (MLD)
199476344
A
Y
376
N
085
UniProt
VAR_007282
P
377
L
ARSA_HUMAN
Disease (MLD)
74315478
A
P
377
L
086
UniProt
VAR_054205
D
381
E
ARSA_HUMAN
Disease (MLD)
6151425
A
D
381
E
087
UniProt
VAR_007283
E
382
K
ARSA_HUMAN
Disease (MLD)
74315479
A
E
382
K
088
UniProt
VAR_007284
R
384
C
ARSA_HUMAN
Disease (MLD)
199476370
A
R
384
C
089
UniProt
VAR_007285
R
390
Q
ARSA_HUMAN
Disease (MLD)
199476391
A
R
390
Q
090
UniProt
VAR_007286
R
390
W
ARSA_HUMAN
Disease (MLD)
74315480
A
R
390
W
091
UniProt
VAR_007287
T
391
S
ARSA_HUMAN
Polymorphism
743616
A
T
391
S
092
UniProt
VAR_007288
H
397
Y
ARSA_HUMAN
Disease (MLD)
199476376
A
H
397
Y
093
UniProt
VAR_067418
S
406
G
ARSA_HUMAN
Disease (MLD)
199476361
A
S
406
G
094
UniProt
VAR_054206
T
408
I
ARSA_HUMAN
Disease (MLD)
28940895
A
T
408
I
095
UniProt
VAR_054207
T
409
I
ARSA_HUMAN
Disease (MLD)
74315481
A
T
409
I
096
UniProt
VAR_008133
P
425
T
ARSA_HUMAN
Disease (MLD)
74315485
A
P
425
T
097
UniProt
VAR_007291
P
426
L
ARSA_HUMAN
Disease (MLD)
28940893
A
P
426
L
098
UniProt
VAR_054208
L
428
P
ARSA_HUMAN
Disease (MLD)
199476392
A
L
428
P
099
UniProt
VAR_054209
Y
429
S
ARSA_HUMAN
Disease (MLD)
199476380
A
Y
429
S
100
UniProt
VAR_018839
N
440
S
ARSA_HUMAN
Polymorphism
6151427
A
N
440
S
101
UniProt
VAR_007292
A
464
V
ARSA_HUMAN
Polymorphism
---
A
A
464
V
102
UniProt
VAR_054210
A
469
G
ARSA_HUMAN
Disease (MLD)
199476385
A
A
469
G
103
UniProt
VAR_054211
C
489
G
ARSA_HUMAN
Disease (MLD)
199476388
A
C
489
G
104
UniProt
VAR_007293
R
496
H
ARSA_HUMAN
Polymorphism
6151428
A
R
496
H
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
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1: SULFATASE_1 (A:67-79)
2: SULFATASE_2 (A:115-125)
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ID
AC
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Location
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Location
1
SULFATASE_1
PS00523
Sulfatases signature 1.
ARSA_HUMAN
67-79
1
A:67-79
2
SULFATASE_2
PS00149
Sulfatases signature 2.
ARSA_HUMAN
115-125
1
A:115-125
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1a: SCOP_d1n2la_ (A:)
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(23833)
Fold
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Alkaline phosphatase-like
(78)
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:
Alkaline phosphatase-like
(78)
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Arylsulfatase
(10)
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Arylsulfatase A
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Human (Homo sapiens) [TaxId: 9606]
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d1n2la_
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CATH Domains
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1a: CATH_1n2lA02 (A:371-471)
2a: CATH_1n2lA01 (A:19-370,A:472-503)
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Arylsulfatase, C-terminal domain
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[code=3.30.1120.10, no name defined]
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Human (Homo sapiens)
(9)
1a
1n2lA02
A:371-471
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3-Layer(aba) Sandwich
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Alkaline Phosphatase, subunit A
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Alkaline Phosphatase, subunit A
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Human (Homo sapiens)
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2a
1n2lA01
A:19-370,A:472-503
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Pfam Domains
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1a: PFAM_Sulfatase_1n2lA01 (A:21-440)
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Sulfatase
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Homo sapiens (Human)
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1a
Sulfatase-1n2lA01
A:21-440
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