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1N2H
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE FROM M. TUBERCULOSIS IN COMPLEX WITH A REACTION INTERMEDIATE, PANTOYL ADENYLATE
Authors
:
S. Wang, D. Eisenberg, Tb Structural Genomics Consortium (Tbsgc)
Date
:
22 Oct 02 (Deposition) - 22 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Rossmann Fold, Dimer, Intersubunit Beta Sheet, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
S. Wang, D. Eisenberg
Crystal Structures Of A Pantothenate Synthetase From M. Tuberculosis And Its Complexes With Substrates And A Reaction Intermediate
Protein Sci. V. 12 1097 2003
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: ETHANOL (EOHa)
1b: ETHANOL (EOHb)
1c: ETHANOL (EOHc)
1d: ETHANOL (EOHd)
1e: ETHANOL (EOHe)
2a: GLYCEROL (GOLa)
3a: MANGANESE (II) ION (MNa)
4a: PANTOYL ADENYLATE (PAJa)
4b: PANTOYL ADENYLATE (PAJb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EOH
5
Ligand/Ion
ETHANOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
MN
1
Ligand/Ion
MANGANESE (II) ION
4
PAJ
2
Ligand/Ion
PANTOYL ADENYLATE
5
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:56 , PRO B:58 , ARG B:154 , HOH B:1131
BINDING SITE FOR RESIDUE SO4 B 601
02
AC2
SOFTWARE
ARG A:56 , PRO A:58 , ARG A:154
BINDING SITE FOR RESIDUE SO4 A 602
03
AC3
SOFTWARE
ARG A:132 , ARG A:198 , ARG A:278
BINDING SITE FOR RESIDUE SO4 A 603
04
AC4
SOFTWARE
ASP A:88
BINDING SITE FOR RESIDUE MN A 901
05
AC5
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , GLN A:72 , VAL A:142 , PHE A:157 , GLY A:158 , LYS A:160 , ASP A:161 , GLN A:164 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , HOH A:1002 , HOH A:1047 , HOH A:1050 , HOH A:1051
BINDING SITE FOR RESIDUE PAJ A 1001
06
AC6
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , LEU B:50 , ASN B:69 , GLN B:72 , VAL B:142 , PHE B:157 , GLY B:158 , LYS B:160 , ASP B:161 , GLN B:164 , PRO B:185 , THR B:186 , VAL B:187 , MET B:195 , HOH B:1039 , HOH B:1067 , HOH B:1092
BINDING SITE FOR RESIDUE PAJ B 1002
07
AC7
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 501
08
AC8
SOFTWARE
MET A:40 , GLN A:72 , HIS A:135 , ARG A:198
BINDING SITE FOR RESIDUE EOH A 701
09
AC9
SOFTWARE
MET B:40 , GLN B:72 , ARG B:132 , HIS B:135
BINDING SITE FOR RESIDUE EOH B 702
10
BC1
SOFTWARE
LYS B:160 , ASP B:161 , SER B:196
BINDING SITE FOR RESIDUE EOH B 703
11
BC2
SOFTWARE
THR A:218 , HOH A:1031 , HIS B:222 , THR B:225
BINDING SITE FOR RESIDUE EOH B 704
12
BC3
SOFTWARE
LEU B:147 , ARG B:151 , PRO B:152 , ASP B:178
BINDING SITE FOR RESIDUE EOH B 705
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1n2ha_ (A:)
1b: SCOP_d1n2hb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d1n2ha_
A:
1b
d1n2hb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1n2hB02 (B:186-288)
1b: CATH_1n2hA02 (A:186-290)
2a: CATH_1n2hA01 (A:3-185)
2b: CATH_1n2hB01 (B:3-185)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(19)
1a
1n2hB02
B:186-288
1b
1n2hA02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(20)
2a
1n2hA01
A:3-185
2b
1n2hB01
B:3-185
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pantoate_ligase_1n2hB01 (B:11-285)
1b: PFAM_Pantoate_ligase_1n2hB02 (B:11-285)
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Clan
:
HUP
(230)
Family
:
Pantoate_ligase
(16)
Mycobacterium tuberculosis
(7)
1a
Pantoate_ligase-1n2hB01
B:11-285
1b
Pantoate_ligase-1n2hB02
B:11-285
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