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1N2G
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PANTOTHENATE SYNTHETASE FROM M. TUBERCULOSIS IN COMPLEX WITH AMPCPP
Authors
:
S. Wang, D. Eisenberg, Tb Structural Genomics Consortium (Tbsgc)
Date
:
22 Oct 02 (Deposition) - 22 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Rossmann Fold, Dimer, Intersubunit Beta Sheet, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Wang, D. Eisenberg
Crystal Structures Of A Pantothenate Synthetase From M. Tuberculosis And Its Complexes With Substrates And A Reaction Intermediate
Protein Sci. V. 12 1097 2003
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCa)
1b: DIPHOSPHOMETHYLPHOSPHONIC ACID ADE... (APCb)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
2c: ETHANOL (EOHc)
2d: ETHANOL (EOHd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
APC
2
Ligand/Ion
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2
EOH
4
Ligand/Ion
ETHANOL
3
GOL
5
Ligand/Ion
GLYCEROL
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:56 , VAL B:57 , ARG B:154 , HOH B:1043
BINDING SITE FOR RESIDUE SO4 B 601
02
AC2
SOFTWARE
ARG A:56 , PRO A:58 , ARG A:154 , HOH A:1037
BINDING SITE FOR RESIDUE SO4 A 602
03
AC3
SOFTWARE
ARG A:198 , APC A:801 , HOH A:978 , HOH A:1018
BINDING SITE FOR RESIDUE MG A 901
04
AC4
SOFTWARE
LYS B:160 , APC B:802 , HOH B:973 , HOH B:992
BINDING SITE FOR RESIDUE MG B 902
05
AC5
SOFTWARE
MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , LEU A:50 , TYR A:82 , PHE A:157 , GLY A:158 , LYS A:160 , ASP A:161 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , ARG A:198 , GOL A:503 , MG A:901 , HOH A:935 , HOH A:1018
BINDING SITE FOR RESIDUE APC A 801
06
AC6
SOFTWARE
HIS B:44 , HIS B:47 , LEU B:50 , TYR B:82 , PHE B:157 , GLY B:158 , LYS B:160 , ASP B:161 , THR B:186 , VAL B:187 , MET B:195 , SER B:196 , SER B:197 , ARG B:198 , GOL B:501 , MG B:902 , HOH B:966 , HOH B:973 , HOH B:992 , HOH B:1013
BINDING SITE FOR RESIDUE APC B 802
07
AC7
SOFTWARE
GLN B:72 , VAL B:139 , VAL B:142 , GLN B:164 , APC B:802 , HOH B:979
BINDING SITE FOR RESIDUE GOL B 501
08
AC8
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 502
09
AC9
SOFTWARE
GLN A:72 , GLN A:164 , APC A:801 , HOH A:905
BINDING SITE FOR RESIDUE GOL A 503
10
BC1
SOFTWARE
LEU A:114 , ARG A:115 , THR A:117 , GLN B:119 , PRO B:120
BINDING SITE FOR RESIDUE GOL A 504
11
BC2
SOFTWARE
GLN A:148 , ASN B:176 , HOH B:982
BINDING SITE FOR RESIDUE GOL B 505
12
BC3
SOFTWARE
THR A:218 , HIS B:222 , THR B:225
BINDING SITE FOR RESIDUE EOH B 701
13
BC4
SOFTWARE
VAL A:166 , ARG A:169 , HOH A:929
BINDING SITE FOR RESIDUE EOH A 702
14
BC5
SOFTWARE
HOH B:919
BINDING SITE FOR RESIDUE EOH B 703
15
BC6
SOFTWARE
GLU A:189 , LEU A:193 , ASN A:199 , ARG A:207
BINDING SITE FOR RESIDUE EOH A 704
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1n2ga_ (A:)
1b: SCOP_d1n2gb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d1n2ga_
A:
1b
d1n2gb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1n2gA02 (A:185-288)
1b: CATH_1n2gB02 (B:185-288)
2a: CATH_1n2gA01 (A:3-184)
2b: CATH_1n2gB01 (B:2-184)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(19)
1a
1n2gA02
A:185-288
1b
1n2gB02
B:185-288
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(20)
2a
1n2gA01
A:3-184
2b
1n2gB01
B:2-184
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (101 KB)
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