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1N23
Asym. Unit
Info
Asym.Unit (188 KB)
Biol.Unit 1 (182 KB)
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(1)
Title
:
(+)-BORNYL DIPHOSPHATE SYNTHASE: COMPLEX WITH MG, PYROPHOSPHATE, AND (1R,4S)-2-AZABORNANE
Authors
:
D. A. Whittington, M. L. Wise, M. Urbansky, R. M. Coates, R. B. Croteau, D. W. Christianson
Date
:
21 Oct 02 (Deposition) - 27 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Terpene Synthase Fold, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. A. Whittington, M. L. Wise, M. Urbansky, R. M. Coates, R. B. Croteau, D. W. Christianson
Bornyl Diphosphate Synthase: Structure And Strategy For Carbocation Manipulation By A Terpenoid Cyclase
Proc. Natl. Acad. Sci. Usa V. 99 15375 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: (1R,4S)-2-AZABORNANE (2BNa)
1b: (1R,4S)-2-AZABORNANE (2BNb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: PYROPHOSPHATE 2- (POPa)
3b: PYROPHOSPHATE 2- (POPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2BN
2
Ligand/Ion
(1R,4S)-2-AZABORNANE
2
MG
6
Ligand/Ion
MAGNESIUM ION
3
POP
2
Ligand/Ion
PYROPHOSPHATE 2-
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:351 , ASP A:355 , MG A:702 , POP A:901 , HOH A:964 , HOH A:965
BINDING SITE FOR RESIDUE MG A 701
02
AC2
SOFTWARE
ASP A:351 , ASP A:355 , MG A:701 , POP A:901 , HOH A:960 , HOH A:962 , HOH A:963
BINDING SITE FOR RESIDUE MG A 702
03
AC3
SOFTWARE
ASP A:496 , THR A:500 , GLU A:504 , POP A:901 , HOH A:961
BINDING SITE FOR RESIDUE MG A 703
04
AC4
SOFTWARE
ASP B:351 , ASP B:355 , MG B:705 , POP B:902 , HOH B:967 , HOH B:968 , HOH B:969
BINDING SITE FOR RESIDUE MG B 704
05
AC5
SOFTWARE
ASP B:351 , ASP B:355 , MG B:704 , POP B:902 , HOH B:971 , HOH B:972
BINDING SITE FOR RESIDUE MG B 705
06
AC6
SOFTWARE
ASP B:496 , THR B:500 , GLU B:504 , POP B:902 , HOH B:970
BINDING SITE FOR RESIDUE MG B 706
07
AC7
SOFTWARE
THR A:348 , VAL A:452 , ALA A:453 , TYR A:572 , PHE A:578 , POP A:901 , HOH A:959
BINDING SITE FOR RESIDUE 2BN A 801
08
AC8
SOFTWARE
THR B:348 , VAL B:452 , ALA B:453 , TYR B:572 , PHE B:578 , POP B:902 , HOH B:904
BINDING SITE FOR RESIDUE 2BN B 802
09
AC9
SOFTWARE
ARG A:314 , ASP A:351 , ASP A:355 , ARG A:493 , ASP A:496 , THR A:500 , GLU A:504 , LYS A:512 , MG A:701 , MG A:702 , MG A:703 , 2BN A:801 , HOH A:959 , HOH A:960 , HOH A:961 , HOH A:963 , HOH A:964 , HOH A:965 , HOH A:966 , HOH A:972
BINDING SITE FOR RESIDUE POP A 901
10
BC1
SOFTWARE
ARG B:314 , ASP B:351 , ASP B:355 , ARG B:493 , ASP B:496 , THR B:500 , GLU B:504 , LYS B:512 , MG B:704 , MG B:705 , MG B:706 , 2BN B:802 , HOH B:904 , HOH B:966 , HOH B:967 , HOH B:969 , HOH B:970 , HOH B:971 , HOH B:972 , HOH B:1002
BINDING SITE FOR RESIDUE POP B 902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1n23a1 (A:55-270)
1b: SCOP_d1n23b1 (B:61-270)
2a: SCOP_d1n23a2 (A:271-598)
2b: SCOP_d1n23b2 (B:271-598)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Terpenoid cyclase N-terminal domain
(15)
Protein domain
:
(+)-bornyl diphosphate synthase
(7)
Garden sage (Salvia officinalis) [TaxId: 38868]
(7)
1a
d1n23a1
A:55-270
1b
d1n23b1
B:61-270
Fold
:
Terpenoid synthases
(196)
Superfamily
:
Terpenoid synthases
(196)
Family
:
Terpenoid cyclase C-terminal domain
(19)
Protein domain
:
(+)-bornyl diphosphate synthase
(7)
Garden sage (Salvia officinalis) [TaxId: 38868]
(7)
2a
d1n23a2
A:271-598
2b
d1n23b2
B:271-598
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1n23A01 (A:80-285)
1b: CATH_1n23B01 (B:80-285)
2a: CATH_1n23A02 (A:286-598)
2b: CATH_1n23B02 (B:286-598)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Isoprenoid Synthase; domain 1
(16)
Homologous Superfamily
:
Isoprenoid Synthase - domain 1
(16)
Garden sage (Salvia officinalis)
(7)
1a
1n23A01
A:80-285
1b
1n23B01
B:80-285
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Farnesyl Diphosphate Synthase
(109)
Homologous Superfamily
:
Farnesyl Diphosphate Synthase
(109)
Garden sage (Salvia officinalis)
(7)
2a
1n23A02
A:286-598
2b
1n23B02
B:286-598
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Terpene_synth_1n23B01 (B:65-245)
1b: PFAM_Terpene_synth_1n23B02 (B:65-245)
2a: PFAM_Terpene_synth_C_1n23B03 (B:275-544)
2b: PFAM_Terpene_synth_C_1n23B04 (B:275-544)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Terpene_synth]
(17)
Family
:
Terpene_synth
(17)
Salvia officinalis (Sage)
(6)
1a
Terpene_synth-1n23B01
B:65-245
1b
Terpene_synth-1n23B02
B:65-245
Clan
:
no clan defined [family: Terpene_synth_C]
(19)
Family
:
Terpene_synth_C
(19)
Salvia officinalis (Sage)
(6)
2a
Terpene_synth_C-1n23B03
B:275-544
2b
Terpene_synth_C-1n23B04
B:275-544
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Asym.Unit (188 KB)
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