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Getting 'Exon' information from database.
1N0W
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A RAD51-BRCA2 BRC REPEAT COMPLEX
Authors
:
L. Pellegrini, D. S. Yu, T. Lo, S. Anand, M. Lee, T. L. Blundell, A. R. Venkitaraman
Date
:
15 Oct 02 (Deposition) - 27 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,L
Biol. Unit 1: A,B,C,L (1x)
Keywords
:
Dna Repair, Homologous Recombination, Breast Cancer Susceptibility, Reca-Like Atpase, Protein Complex, Gene Regulation/Antitumor Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Pellegrini, D. S. Yu, T. Lo, S. Anand, M. Lee, T. L. Blundell, A. R. Venkitaraman
Insights Into Dna Recombination From The Structure Of A Rad51-Brca2 Complex
Nature V. 420 287 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: MAGNESIUM ION (MGa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:101 , LEU A:113 , GLY A:116 , HOH A:553 , HOH A:646
BINDING SITE FOR RESIDUE MG A 401
2
AC2
SOFTWARE
ARG A:130 , GLY A:132 , LYS A:133 , THR A:134 , GLN A:135
BINDING SITE FOR RESIDUE CL A 501
3
AC3
SOFTWARE
GLU A:154 , ALA A:246 , HOH A:516 , HOH A:536 , HOH A:689
BINDING SITE FOR RESIDUE EDO A 502
4
AC4
SOFTWARE
GLU A:124 , LEU A:249 , ALA A:293 , ARG A:299 , HOH A:528
BINDING SITE FOR RESIDUE EDO A 503
5
AC5
SOFTWARE
ILE A:311 , GLU A:324 , MSE A:326 , HOH A:694 , HOH A:695
BINDING SITE FOR RESIDUE EDO A 504
6
AC6
SOFTWARE
THR A:162 , GLU A:163 , ALA A:226 , LEU A:227
BINDING SITE FOR RESIDUE EDO A 505
7
AC7
SOFTWARE
GLN A:135 , THR A:165 , ARG A:170 , PRO A:318 , CYS A:319
BINDING SITE FOR RESIDUE EDO A 506
[
close Site info
]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010899 (R150Q, chain A, )
2: VAR_032721 (L1522F, chain B, )
3: VAR_020718 (F1524V, chain B, )
4: VAR_005101 (G1529R, chain B, )
5: VAR_056753 (V1542M, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010899
R
150
Q
RAD51_HUMAN
Disease (BC)
121917739
A
R
150
Q
2
UniProt
VAR_032721
L
1522
F
BRCA2_HUMAN
Unclassified
---
B
L
1522
F
3
UniProt
VAR_020718
F
1524
V
BRCA2_HUMAN
Unclassified
---
B
F
1524
V
4
UniProt
VAR_005101
G
1529
R
BRCA2_HUMAN
Unclassified
28897728
B
G
1529
R
5
UniProt
VAR_056753
V
1542
M
BRCA2_HUMAN
Polymorphism
28897729
B
V
1542
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (A:98-267)
2: RECA_3 (A:293-339)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
RAD51_HUMAN
98-269
1
A:98-267
2
RECA_3
PS50163
RecA family profile 2.
RAD51_HUMAN
276-339
1
A:293-339
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.7 (A:98-115)
Exon 1.8 (A:115-145)
Exon 1.10c (A:146-177)
Exon 1.11a (A:177-215)
Exon 1.12a (A:215-258 (gaps))
Exon 1.13 (A:259-299 (gaps))
Exon 1.14f (A:299-339)
Exon 2.11 (B:1519-1551)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.5b/1.7
02: Boundary 1.7/1.8
03: Boundary 1.8/1.10c
04: Boundary 1.10c/1.11a
05: Boundary 1.11a/1.12a
06: Boundary 1.12a/1.13
07: Boundary 1.13/1.14f
08: Boundary 1.14f/-
09: Boundary 2.10b/2.11
10: Boundary 2.11/2.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000267868
2b
ENSE00001845063
chr15:
40987358-40987623
266
RAD51_HUMAN
-
0
0
-
-
1.4b
ENST00000267868
4b
ENSE00001100140
chr15:
40990955-40991043
89
RAD51_HUMAN
1-29
29
0
-
-
1.5b
ENST00000267868
5b
ENSE00002189671
chr15:
40993262-40993399
138
RAD51_HUMAN
30-75
46
0
-
-
1.7
ENST00000267868
7
ENSE00000675584
chr15:
40998375-40998492
118
RAD51_HUMAN
76-115
40
1
A:98-115
18
1.8
ENST00000267868
8
ENSE00000675585
chr15:
41001223-41001314
92
RAD51_HUMAN
115-145
31
1
A:115-145
31
1.10c
ENST00000267868
10c
ENSE00000675586
chr15:
41011003-41011097
95
RAD51_HUMAN
146-177
32
1
A:146-177
32
1.11a
ENST00000267868
11a
ENSE00000675587
chr15:
41020909-41021022
114
RAD51_HUMAN
177-215
39
1
A:177-215
39
1.12a
ENST00000267868
12a
ENSE00001221254
chr15:
41021703-41021832
130
RAD51_HUMAN
215-258
44
1
A:215-258 (gaps)
44
1.13
ENST00000267868
13
ENSE00000675589
chr15:
41022051-41022172
122
RAD51_HUMAN
259-299
41
1
A:259-299 (gaps)
41
1.14f
ENST00000267868
14f
ENSE00001875782
chr15:
41023253-41024354
1102
RAD51_HUMAN
299-339
41
1
A:299-339
41
2.1a
ENST00000380152
1a
ENSE00001184784
chr13:
32889611-32889804
194
BRCA2_HUMAN
-
0
0
-
-
2.2
ENST00000380152
2
ENSE00001484009
chr13:
32890559-32890664
106
BRCA2_HUMAN
1-23
23
0
-
-
2.3a
ENST00000380152
3a
ENSE00000939160
chr13:
32893214-32893462
249
BRCA2_HUMAN
23-106
84
0
-
-
2.4
ENST00000380152
4
ENSE00000939161
chr13:
32899213-32899321
109
BRCA2_HUMAN
106-142
37
0
-
-
2.5
ENST00000380152
5
ENSE00000939162
chr13:
32900238-32900287
50
BRCA2_HUMAN
142-159
18
0
-
-
2.6
ENST00000380152
6
ENSE00000939163
chr13:
32900379-32900419
41
BRCA2_HUMAN
159-172
14
0
-
-
2.7
ENST00000380152
7
ENSE00000939164
chr13:
32900636-32900750
115
BRCA2_HUMAN
173-211
39
0
-
-
2.8
ENST00000380152
8
ENSE00000939165
chr13:
32903580-32903629
50
BRCA2_HUMAN
211-227
17
0
-
-
2.9
ENST00000380152
9
ENSE00000939166
chr13:
32905056-32905167
112
BRCA2_HUMAN
228-265
38
0
-
-
2.10b
ENST00000380152
10b
ENSE00000939167
chr13:
32906409-32907524
1116
BRCA2_HUMAN
265-637
373
0
-
-
2.11
ENST00000380152
11
ENSE00000939168
chr13:
32910402-32915333
4932
BRCA2_HUMAN
637-2281
1645
1
B:1519-1551
33
2.12
ENST00000380152
12
ENSE00000939169
chr13:
32918695-32918790
96
BRCA2_HUMAN
2281-2313
33
0
-
-
2.13
ENST00000380152
13
ENSE00000939171
chr13:
32920964-32921033
70
BRCA2_HUMAN
2313-2336
24
0
-
-
2.14
ENST00000380152
14
ENSE00000939173
chr13:
32928998-32929425
428
BRCA2_HUMAN
2336-2479
144
0
-
-
2.15
ENST00000380152
15
ENSE00000939174
chr13:
32930565-32930746
182
BRCA2_HUMAN
2479-2539
61
0
-
-
2.16
ENST00000380152
16
ENSE00000939175
chr13:
32931879-32932066
188
BRCA2_HUMAN
2540-2602
63
0
-
-
2.17
ENST00000380152
17
ENSE00001394102
chr13:
32936660-32936830
171
BRCA2_HUMAN
2602-2659
58
0
-
-
2.18
ENST00000380152
18
ENSE00000939177
chr13:
32937316-32937670
355
BRCA2_HUMAN
2659-2777
119
0
-
-
2.19
ENST00000380152
19
ENSE00000939178
chr13:
32944539-32944694
156
BRCA2_HUMAN
2778-2829
52
0
-
-
2.20a
ENST00000380152
20a
ENSE00000939180
chr13:
32945093-32945237
145
BRCA2_HUMAN
2830-2878
49
0
-
-
2.22
ENST00000380152
22
ENSE00000939181
chr13:
32950807-32950928
122
BRCA2_HUMAN
2878-2918
41
0
-
-
2.23b
ENST00000380152
23b
ENSE00000939183
chr13:
32953454-32953652
199
BRCA2_HUMAN
2919-2985
67
0
-
-
2.24a
ENST00000380152
24a
ENSE00000939185
chr13:
32953887-32954050
164
BRCA2_HUMAN
2985-3039
55
0
-
-
2.25
ENST00000380152
25
ENSE00000939187
chr13:
32954144-32954282
139
BRCA2_HUMAN
3040-3086
47
0
-
-
2.26
ENST00000380152
26
ENSE00000939189
chr13:
32968826-32969070
245
BRCA2_HUMAN
3086-3167
82
0
-
-
2.28b
ENST00000380152
28b
ENSE00000939192
chr13:
32971035-32971181
147
BRCA2_HUMAN
3168-3216
49
0
-
-
2.29c
ENST00000380152
29c
ENSE00001184789
chr13:
32972299-32973347
1049
BRCA2_HUMAN
3217-3418
202
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1n0wa_ (A:)
2a: SCOP_d1n0wb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
DNA repair protein Rad51, catalytic domain
(18)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1n0wa_
A:
Class
:
Peptides
(792)
Fold
:
BRCA2 BRC4 repeat
(1)
Superfamily
:
BRCA2 BRC4 repeat
(1)
Family
:
BRCA2 BRC4 repeat
(1)
Protein domain
:
BRCA2 BRC4 repeat
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1n0wb_
B:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1n0wA00 (A:98-339)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1n0wA00
A:98-339
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Rad51_1n0wA01 (A:98-338)
2a: PFAM_BRCA2_1n0wB01 (B:1519-1551)
View:
Select:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Rad51
(10)
Homo sapiens (Human)
(3)
1a
Rad51-1n0wA01
A:98-338
Clan
:
no clan defined [family: BRCA2]
(1)
Family
:
BRCA2
(1)
Homo sapiens (Human)
(1)
2a
BRCA2-1n0wB01
B:1519-1551
[
close Pfam info
]
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