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1MZW
Asym. Unit
Info
Asym.Unit (42 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A U4/U6 SNRNP COMPLEX BETWEEN HUMAN SPLICEOSOMAL CYCLOPHILIN H AND A U4/U6-60K PEPTIDE
Authors
:
U. Reidt, M. C. Wahl, D. S. Horowitz, R. Luehrmann, R. Ficner
Date
:
10 Oct 02 (Deposition) - 19 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cyclophilin, Peptidyl-Prolyl-Cis/Trans Isomerase, Spliceosome, Snrnp, U4/U6-60K Protein, Wd Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Reidt, M. C. Wahl, D. Fasshauer, D. S. Horowitz, R. Luehrmann, R. Ficner
Crystal Structure Of A Complex Between Human Spliceosomal Cyclophilin H And A U4/U6 Snrnp-60K Peptide
J. Mol. Biol. V. 331 45 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:14-176)
2: CSA_PPIASE_1 (A:60-77)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIH_HUMAN
14-176
1
A:14-176
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIH_HUMAN
60-77
1
A:60-77
[
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]
Exons
(11, 11)
Info
All Exons
Exon 1.1b (A:5-22)
Exon 1.1f (A:23-44)
Exon 1.2a (A:44-52)
Exon 1.2g (A:52-67)
Exon 1.3a (A:67-81)
Exon 1.4 (A:82-112)
Exon 1.5 (A:113-142)
Exon 1.6 (A:142-155)
Exon 1.7b (A:156-177)
Exon 2.3a (B:106-131)
Exon 2.4a (B:131-136)
View:
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.1f
03: Boundary 1.1f/1.2a
04: Boundary 1.2a/1.2g
05: Boundary 1.2g/1.3a
06: Boundary 1.3a/1.4
07: Boundary 1.4/1.5
08: Boundary 1.5/1.6
09: Boundary 1.6/1.7b
10: Boundary 1.7b/1.9b
11: Boundary 2.2a/2.3a
12: Boundary 2.3a/2.4a
13: Boundary 2.4a/2.4c
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000304979
1b
ENSE00001830638
chr1:
43124096-43124183
88
PPIH_HUMAN
1-22
22
1
A:5-22
18
1.1f
ENST00000304979
1f
ENSE00001670861
chr1:
43124515-43124579
65
PPIH_HUMAN
23-44
22
1
A:23-44
22
1.2a
ENST00000304979
2a
ENSE00001144207
chr1:
43124899-43124922
24
PPIH_HUMAN
44-52
9
1
A:44-52
9
1.2g
ENST00000304979
2g
ENSE00001144198
chr1:
43125193-43125237
45
PPIH_HUMAN
52-67
16
1
A:52-67
16
1.3a
ENST00000304979
3a
ENSE00001144190
chr1:
43126533-43126575
43
PPIH_HUMAN
67-81
15
1
A:67-81
15
1.4
ENST00000304979
4
ENSE00001144183
chr1:
43130534-43130626
93
PPIH_HUMAN
82-112
31
1
A:82-112
31
1.5
ENST00000304979
5
ENSE00001144176
chr1:
43131651-43131738
88
PPIH_HUMAN
113-142
30
1
A:113-142
30
1.6
ENST00000304979
6
ENSE00001144169
chr1:
43132218-43132258
41
PPIH_HUMAN
142-155
14
1
A:142-155
14
1.7b
ENST00000304979
7b
ENSE00001146489
chr1:
43133022-43133111
90
PPIH_HUMAN
156-177
22
1
A:156-177
22
1.9b
ENST00000304979
9b
ENSE00001847781
chr1:
43142255-43142429
175
PPIH_HUMAN
-
0
0
-
-
2.1
ENST00000374198
1
ENSE00001519346
chr9:
116037623-116038050
428
PRP4_HUMAN
1-9
9
0
-
-
2.2a
ENST00000374198
2a
ENSE00000806202
chr9:
116038825-116039005
181
PRP4_HUMAN
10-70
61
0
-
-
2.3a
ENST00000374198
3a
ENSE00000806199
chr9:
116041225-116041411
187
PRP4_HUMAN
70-132
63
1
B:106-131
26
2.4a
ENST00000374198
4a
ENSE00000806196
chr9:
116044926-116045013
88
PRP4_HUMAN
132-161
30
1
B:131-136
6
2.4c
ENST00000374198
4c
ENSE00000806194
chr9:
116045412-116045491
80
PRP4_HUMAN
162-188
27
0
-
-
2.5
ENST00000374198
5
ENSE00000806192
chr9:
116045669-116045762
94
PRP4_HUMAN
188-219
32
0
-
-
2.6
ENST00000374198
6
ENSE00000806190
chr9:
116046575-116046669
95
PRP4_HUMAN
220-251
32
0
-
-
2.7
ENST00000374198
7
ENSE00000806188
chr9:
116048512-116048570
59
PRP4_HUMAN
251-271
21
0
-
-
2.8
ENST00000374198
8
ENSE00000806186
chr9:
116048985-116049108
124
PRP4_HUMAN
271-312
42
0
-
-
2.9
ENST00000374198
9
ENSE00000806185
chr9:
116050455-116050544
90
PRP4_HUMAN
312-342
31
0
-
-
2.10
ENST00000374198
10
ENSE00000806182
chr9:
116052746-116052868
123
PRP4_HUMAN
342-383
42
0
-
-
2.11
ENST00000374198
11
ENSE00000806180
chr9:
116052980-116053087
108
PRP4_HUMAN
383-419
37
0
-
-
2.12
ENST00000374198
12
ENSE00000806178
chr9:
116053178-116053296
119
PRP4_HUMAN
419-459
41
0
-
-
2.13
ENST00000374198
13
ENSE00001519311
chr9:
116053747-116055466
1720
PRP4_HUMAN
459-522
64
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mzwa_ (A:)
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)
(
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(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin (eukaryotic)
(77)
Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
(2)
1a
d1mzwa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mzwA00 (A:5-177)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
1a
1mzwA00
A:5-177
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Pro_isomerase_1mzwA01 (A:14-176)
2a: PFAM_PRP4_1mzwB01 (B:107-136)
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(
)
Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
1a
Pro_isomerase-1mzwA01
A:14-176
Clan
:
no clan defined [family: PRP4]
(1)
Family
:
PRP4
(1)
Homo sapiens (Human)
(1)
2a
PRP4-1mzwB01
B:107-136
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