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1MZN
Biol. Unit 1
Info
Asym.Unit (171 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (85 KB)
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Title
:
CRYSTAL STRUCTURE AT 1.9 ANGSTROEMS RESOLUTION OF THE HOMODIMER OF HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO THE SYNTHETIC AGONIST COMPOUND BMS 649 AND A COACTIVATOR PEPTIDE
Authors
:
P. F. Egea, A. Mitschler, D. Moras
Date
:
09 Oct 02 (Deposition) - 23 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Transcription, Nuclear Receptor, Retinoic Acid Receptors, Agonist
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. F. Egea, A. Mitschler, D. Moras
Molecular Recognition Of Agonist Ligands By Rxrs
Mol. Endocrinol. V. 16 987 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6a)
1b: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6b)
1c: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6c)
1d: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BM6
2
Ligand/Ion
4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:268 , ALA A:271 , ALA A:272 , GLN A:275 , ASN A:306 , LEU A:309 , ILE A:310 , PHE A:313 , ARG A:316 , LEU A:326 , ALA A:327 , CYS A:432 , HIS A:435 , HOH A:4020
BINDING SITE FOR RESIDUE BM6 A 200
2
AC2
SOFTWARE
ILE C:1268 , ALA C:1271 , ALA C:1272 , GLN C:1275 , ASN C:1306 , LEU C:1309 , ILE C:1310 , PHE C:1313 , ARG C:1316 , LEU C:1326 , ALA C:1327 , CYS C:1432 , HIS C:1435 , PHE C:1439 , HOH C:4076
BINDING SITE FOR RESIDUE BM6 C 1200
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_050582 (A3327S, chain A/C/E/A/C, )
2: VAR_014621 (S3336I, chain A/C/E/A/C, )
3: VAR_050583 (A3398V, chain A/C/E/A/C, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050582
A
327
S
RXRA_HUMAN
Polymorphism
1805345
A
C
E
A/C
A
327
1327
2327
3327
S
2
UniProt
VAR_014621
S
336
I
RXRA_HUMAN
Polymorphism
1805345
A
C
E
A/C
S
336
1336
2336
3336
I
3
UniProt
VAR_050583
A
398
V
RXRA_HUMAN
Polymorphism
11542209
A
C
E
A/C
A
398
1398
2398
3398
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1mzna_ (A:)
1b: SCOP_d1mznc_ (C:)
1c: SCOP_d1mzne_ (E:)
1d: SCOP_d1mzng_ (G:)
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Protein Domains
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(
)
Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Retinoid-X receptor alpha (RXR-alpha)
(36)
Human (Homo sapiens) [TaxId: 9606]
(33)
1a
d1mzna_
A:
1b
d1mznc_
C:
1c
d1mzne_
E:
1d
d1mzng_
G:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1mznA00 (A:227-458)
1b: CATH_1mznE00 (E:2227-2458)
1c: CATH_1mznC00 (C:1229-1458)
1d: CATH_1mznG00 (G:3229-3458)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1mznA00
A:227-458
1b
1mznE00
E:2227-2458
1c
1mznC00
C:1229-1458
1d
1mznG00
G:3229-3458
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1mznG01 (G:3263-3442)
1b: PFAM_Hormone_recep_1mznG02 (G:3263-3442)
1c: PFAM_Hormone_recep_1mznG03 (G:3263-3442)
1d: PFAM_Hormone_recep_1mznG04 (G:3263-3442)
2a: PFAM_SRC_1_1mznH01 (H:3471-3481)
2b: PFAM_SRC_1_1mznH02 (H:3471-3481)
2c: PFAM_SRC_1_1mznH03 (H:3471-3481)
2d: PFAM_SRC_1_1mznH04 (H:3471-3481)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1mznG01
G:3263-3442
1b
Hormone_recep-1mznG02
G:3263-3442
1c
Hormone_recep-1mznG03
G:3263-3442
1d
Hormone_recep-1mznG04
G:3263-3442
Clan
:
no clan defined [family: SRC-1]
(47)
Family
:
SRC-1
(47)
Homo sapiens (Human)
(33)
2a
SRC-1-1mznH01
H:3471-3481
2b
SRC-1-1mznH02
H:3471-3481
2c
SRC-1-1mznH03
H:3471-3481
2d
SRC-1-1mznH04
H:3471-3481
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Asymmetric Unit 1
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Asym.Unit (171 KB)
Header - Asym.Unit
Biol.Unit 1 (84 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
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