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1MZN
Asym. Unit
Info
Asym.Unit (171 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AT 1.9 ANGSTROEMS RESOLUTION OF THE HOMODIMER OF HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO THE SYNTHETIC AGONIST COMPOUND BMS 649 AND A COACTIVATOR PEPTIDE
Authors
:
P. F. Egea, A. Mitschler, D. Moras
Date
:
09 Oct 02 (Deposition) - 23 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Transcription, Nuclear Receptor, Retinoic Acid Receptors, Agonist
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. F. Egea, A. Mitschler, D. Moras
Molecular Recognition Of Agonist Ligands By Rxrs
Mol. Endocrinol. V. 16 987 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6a)
1b: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6b)
1c: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6c)
1d: 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-... (BM6d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BM6
4
Ligand/Ion
4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:268 , ALA A:271 , ALA A:272 , GLN A:275 , ASN A:306 , LEU A:309 , ILE A:310 , PHE A:313 , ARG A:316 , LEU A:326 , ALA A:327 , CYS A:432 , HIS A:435 , HOH A:4020
BINDING SITE FOR RESIDUE BM6 A 200
2
AC2
SOFTWARE
ILE C:1268 , ALA C:1271 , ALA C:1272 , GLN C:1275 , ASN C:1306 , LEU C:1309 , ILE C:1310 , PHE C:1313 , ARG C:1316 , LEU C:1326 , ALA C:1327 , CYS C:1432 , HIS C:1435 , PHE C:1439 , HOH C:4076
BINDING SITE FOR RESIDUE BM6 C 1200
3
AC3
SOFTWARE
ILE E:2268 , ALA E:2271 , ALA E:2272 , GLN E:2275 , ASN E:2306 , LEU E:2309 , ILE E:2310 , PHE E:2313 , ARG E:2316 , LEU E:2326 , ALA E:2327 , CYS E:2432 , HIS E:2435 , HOH E:4010
BINDING SITE FOR RESIDUE BM6 E 2200
4
AC4
SOFTWARE
ILE G:3268 , ALA G:3271 , ALA G:3272 , GLN G:3275 , ASN G:3306 , LEU G:3309 , ILE G:3310 , PHE G:3313 , ARG G:3316 , LEU G:3326 , ALA G:3327 , CYS G:3432 , HIS G:3435 , HOH G:4057
BINDING SITE FOR RESIDUE BM6 G 3200
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SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050582 (A3327S, chain A/C/E/G, )
2: VAR_014621 (S3336I, chain A/C/E/G, )
3: VAR_050583 (A3398V, chain A/C/E/G, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050582
A
327
S
RXRA_HUMAN
Polymorphism
1805345
A
C
E
G
A
327
1327
2327
3327
S
2
UniProt
VAR_014621
S
336
I
RXRA_HUMAN
Polymorphism
1805345
A
C
E
G
S
336
1336
2336
3336
I
3
UniProt
VAR_050583
A
398
V
RXRA_HUMAN
Polymorphism
11542209
A
C
E
G
A
398
1398
2398
3398
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1mzna_ (A:)
1b: SCOP_d1mznc_ (C:)
1c: SCOP_d1mzne_ (E:)
1d: SCOP_d1mzng_ (G:)
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Protein Domains
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(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Retinoid-X receptor alpha (RXR-alpha)
(36)
Human (Homo sapiens) [TaxId: 9606]
(33)
1a
d1mzna_
A:
1b
d1mznc_
C:
1c
d1mzne_
E:
1d
d1mzng_
G:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1mznA00 (A:227-458)
1b: CATH_1mznE00 (E:2227-2458)
1c: CATH_1mznC00 (C:1229-1458)
1d: CATH_1mznG00 (G:3229-3458)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1mznA00
A:227-458
1b
1mznE00
E:2227-2458
1c
1mznC00
C:1229-1458
1d
1mznG00
G:3229-3458
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1mznG01 (G:3263-3442)
1b: PFAM_Hormone_recep_1mznG02 (G:3263-3442)
1c: PFAM_Hormone_recep_1mznG03 (G:3263-3442)
1d: PFAM_Hormone_recep_1mznG04 (G:3263-3442)
2a: PFAM_SRC_1_1mznH01 (H:3471-3481)
2b: PFAM_SRC_1_1mznH02 (H:3471-3481)
2c: PFAM_SRC_1_1mznH03 (H:3471-3481)
2d: PFAM_SRC_1_1mznH04 (H:3471-3481)
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)
Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1mznG01
G:3263-3442
1b
Hormone_recep-1mznG02
G:3263-3442
1c
Hormone_recep-1mznG03
G:3263-3442
1d
Hormone_recep-1mznG04
G:3263-3442
Clan
:
no clan defined [family: SRC-1]
(47)
Family
:
SRC-1
(47)
Homo sapiens (Human)
(33)
2a
SRC-1-1mznH01
H:3471-3481
2b
SRC-1-1mznH02
H:3471-3481
2c
SRC-1-1mznH03
H:3471-3481
2d
SRC-1-1mznH04
H:3471-3481
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Asym.Unit (171 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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