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1MZ1
Theor. Model
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Theoretical Model (28 KB)
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(1)
Title
:
HOMOLOGY MODEL OF HUMAN GAMMA-B-CRYSTALLIN BOUND WITH ALPHA-D-GLUCOSE AT LYS2
Authors
:
A. Salim, A. Bano, Z. H. Zaidi
Date
:
04 Oct 02 (Deposition) - 30 Oct 02 (Release) - 28 Oct 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Theoretical Model, Crystallin, Glycation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Salim, A. Bano, Z. H. Zaidi
Prediction Of Possible Sites For Posttranslational Modifications In Human Gamma Crystallins: Effect Of Glycation On The Structure Of Human Gamma-B-Crystallin As Analyzed By Molecular Modeling
Proteins: V. 53 162 2003 Struct. , Funct. , Genet.
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLUCOSE (GLCa)
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Label:
No.
Name
Count
Type
Full Name
1
GLC
1
Ligand/Ion
GLUCOSE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021140 (S72I, chain A, )
2: VAR_029517 (R89T, chain A, )
3: VAR_021141 (L110L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021140
S
73
I
CRGB_HUMAN
Polymorphism
---
A
S
72
I
2
UniProt
VAR_029517
R
90
T
CRGB_HUMAN
Polymorphism
2241980
A
R
89
T
3
UniProt
VAR_021141
I
111
L
CRGB_HUMAN
Polymorphism
796287
A
L
110
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CRYSTALLIN_BETA_GAMMA (A:1-39|A:40-82|A:88-128|A:129-171)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRYSTALLIN_BETA_GAMMA
PS50915
Crystallins beta and gamma 'Greek key' motif profile.
CRGB_HUMAN
2-40
41-83
89-129
130-172
4
A:1-39
A:40-82
A:88-128
A:129-171
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Exons
(3, 3)
Info
All Exons
Exon 1.1 (A:1-2)
Exon 1.2 (A:3-83)
Exon 1.3 (A:84-174)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000260988
1
ENSE00001072773
chr2:
209010892-209010836
57
CRGB_HUMAN
1-3
3
1
A:1-2
2
1.2
ENST00000260988
2
ENSE00000796723
chr2:
209010740-209010498
243
CRGB_HUMAN
4-84
81
1
A:3-83
81
1.3
ENST00000260988
3
ENSE00000469896
chr2:
209007637-209007297
341
CRGB_HUMAN
85-175
91
1
A:84-174
91
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SCOP Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Theoretical Model (28 KB)
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