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Getting 'Exon' information from database.
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Asym.Unit (1.1 MB)
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Models
(40 )
Title
:
STRUCTURE OF CARDIAC TROPONIN C-TROPONIN I COMPLEX
Authors
:
M. X. Li, L. Spyracopoulos, B. D. Sykes
Date
:
22 Apr 99 (Deposition) - 06 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : C,I (40 x)
Keywords
:
Troponin, Muscle Contraction, Regulatory Protein, Calcium- Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. X. Li, L. Spyracopoulos, B. D. Sykes
Binding Of Cardiac Troponin-I147-163 Induces A Structural Opening In Human Cardiac Troponin-C.
Biochemistry V. 38 8289 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP C:65 , ASP C:67 , SER C:69 , THR C:71 , GLU C:76
BINDING SITE FOR RESIDUE CA C 90
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_063070 (A8V, chain C, )
2: VAR_019873 (A10V, chain I, )
3: VAR_019874 (R15P, chain I, )
4: VAR_042745 (R15Q, chain I, )
5: VAR_019776 (L29Q, chain C, )
6: VAR_063071 (C84Y, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063070
A
8
V
TNNC1_HUMAN
Disease (CMH13)
---
C
A
8
V
2
UniProt
VAR_019873
A
157
V
TNNI3_HUMAN
Disease (CMH7)
---
I
A
10
V
3
UniProt
VAR_019874
R
162
P
TNNI3_HUMAN
Disease (CMH7)
---
I
R
15
P
4
UniProt
VAR_042745
R
162
Q
TNNI3_HUMAN
Disease (CMH7)
---
I
R
15
Q
5
UniProt
VAR_019776
L
29
Q
TNNC1_HUMAN
Disease (CMH13)
---
C
L
29
Q
6
UniProt
VAR_063071
C
84
Y
TNNC1_HUMAN
Disease (CMH13)
---
C
C
84
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (C:33-51|C:52-87|-|-)
2: EF_HAND_1 (C:65-77|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC1_HUMAN
33-51
52-87
92-127
128-161
2
C:33-51
C:52-87
-
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC1_HUMAN
65-77
105-117
141-153
1
C:65-77
-
-
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.1 (C:1-8)
Exon 1.2b (C:9-19)
Exon 1.3 (C:19-68)
Exon 1.4b (C:68-89)
Exon 2.7 (I:1-17)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2b
3: Boundary 1.2b/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
6: Boundary 2.6/2.7
7: Boundary 2.7/2.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000232975
1
ENSE00001063786
chr3:
52488086-52488008
79
TNNC1_HUMAN
1-8
8
1
C:1-8
8
1.2b
ENST00000232975
2b
ENSE00000770833
chr3:
52486529-52486499
31
TNNC1_HUMAN
9-19
11
1
C:9-19
11
1.3
ENST00000232975
3
ENSE00000770832
chr3:
52486268-52486122
147
TNNC1_HUMAN
19-68
50
1
C:19-68
50
1.4b
ENST00000232975
4b
ENSE00000770831
chr3:
52485874-52485760
115
TNNC1_HUMAN
68-106
39
1
C:68-89
22
1.5c
ENST00000232975
5c
ENSE00000770830
chr3:
52485543-52485407
137
TNNC1_HUMAN
106-152
47
0
-
-
1.6
ENST00000232975
6
ENSE00001063787
chr3:
52485322-52485118
205
TNNC1_HUMAN
152-161
10
0
-
-
2.1
ENST00000344887
1
ENSE00001524342
chr19:
55669100-55668947
154
TNNI3_HUMAN
1-4
4
0
-
-
2.2
ENST00000344887
2
ENSE00001758167
chr19:
55668676-55668664
13
TNNI3_HUMAN
4-8
5
0
-
-
2.3
ENST00000344887
3
ENSE00001250420
chr19:
55668501-55668418
84
TNNI3_HUMAN
9-36
28
0
-
-
2.4
ENST00000344887
4
ENSE00000727912
chr19:
55668012-55667971
42
TNNI3_HUMAN
37-50
14
0
-
-
2.5
ENST00000344887
5
ENSE00000727909
chr19:
55667700-55667569
132
TNNI3_HUMAN
51-94
44
0
-
-
2.6
ENST00000344887
6
ENSE00000417663
chr19:
55666198-55666109
90
TNNI3_HUMAN
95-124
30
0
-
-
2.7
ENST00000344887
7
ENSE00000856455
chr19:
55665574-55665398
177
TNNI3_HUMAN
125-183
59
1
I:1-17
17
2.8
ENST00000344887
8
ENSE00001250409
chr19:
55663285-55663138
148
TNNI3_HUMAN
184-210
27
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1mxlc_ (C:)
2a: SCOP_d1mxli_ (I:)
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Troponin C
(53)
Human (Homo sapiens), cardiac isoform [TaxId: 9606]
(16)
1a
d1mxlc_
C:
Class
:
Peptides
(792)
Fold
:
Troponin I fragments
(5)
Superfamily
:
Troponin I fragments
(5)
Family
:
Troponin I fragments
(5)
Protein domain
:
Troponin I fragments
(5)
Human (Homo sapiens), cardiac isoform [TaxId: 9606]
(2)
2a
d1mxli_
I:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mxlC00 (C:1-89)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1mxlC00
C:1-89
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_EF_hand_6_1mxlC01 (C:32-84)
2a: PFAM_Troponin_1mxlI01 (I:1-17)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EF_hand
(270)
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
1a
EF_hand_6-1mxlC01
C:32-84
Clan
:
no clan defined [family: Troponin]
(10)
Family
:
Troponin
(10)
Homo sapiens (Human)
(5)
2a
Troponin-1mxlI01
I:1-17
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]
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Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain I
Asymmetric Unit 1
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