PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1MX9
Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (520 KB)
Biol.Unit 2 (517 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN LIVER CARBOXYLESTERASE IN COMPLEXED WITH NALOXONE METHIODIDE, A HEROIN ANALOGUE
Authors
:
S. Bencharit, C. L. Morton, Y. Xue, P. M. Potter, M. R. Redinbo
Date
:
01 Oct 02 (Deposition) - 08 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Esterase, Hydrolase, Heroin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bencharit, C. L. Morton, Y. Xue, P. M. Potter, M. R. Redinbo
Structural Basis Of Heroin And Cocaine Metabolism By A Promiscuous Human Drug-Processing Enzyme
Nat. Struct. Biol. V. 10 349 2003
[
close entry info
]
Hetero Components
(2, 25)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2a: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXa)
2b: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXb)
2c: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXc)
2d: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXd)
2e: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXe)
2f: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXf)
2g: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXg)
2h: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXh)
2i: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXi)
2j: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXj)
2k: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXk)
2l: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-... (NLXl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NLX
12
Ligand/Ion
(5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-17-METHYL-6-OXO-17-(2-PROPENYL)-MORPHINANIUM
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:180 , ASN A:1079 , THR A:1081
BINDING SITE FOR RESIDUE NAG A 179
02
AC2
SOFTWARE
NAG A:179
BINDING SITE FOR RESIDUE NAG A 180
03
AC3
SOFTWARE
ASN B:2079 , THR B:2081
BINDING SITE FOR RESIDUE NAG B 279
04
AC4
SOFTWARE
ASN C:3079
BINDING SITE FOR RESIDUE NAG C 379
05
AC5
SOFTWARE
VAL D:4077 , ASN D:4079
BINDING SITE FOR RESIDUE NAG D 479
06
AC6
SOFTWARE
ASN E:5079 , THR E:5081 , HOH E:7262
BINDING SITE FOR RESIDUE NAG E 579
07
AC7
SOFTWARE
VAL F:6077 , ASN F:6079
BINDING SITE FOR RESIDUE NAG F 679
08
AC8
SOFTWARE
VAL G:1077 , ASN G:1079 , HOH G:7208
BINDING SITE FOR RESIDUE NAG G 179
09
AC9
SOFTWARE
LEU H:2034 , ASN H:2079 , THR H:2081 , HOH H:7612 , HOH H:7898
BINDING SITE FOR RESIDUE NAG H 279
10
BC1
SOFTWARE
ASN I:3079 , THR I:3081 , HOH I:7813
BINDING SITE FOR RESIDUE NAG I 379
11
BC2
SOFTWARE
LEU J:4034 , ASN J:4079 , THR J:4081 , SER J:4082 , HOH J:7206 , HOH J:7674
BINDING SITE FOR RESIDUE NAG J 479
12
BC3
SOFTWARE
ASN K:5079 , THR K:5081 , HOH K:8071
BINDING SITE FOR RESIDUE NAG K 579
13
BC4
SOFTWARE
LEU A:1096 , LEU A:1097 , GLY A:1142 , GLY A:1143 , VAL A:1146 , GLU A:1220 , SER A:1221 , LEU A:1304 , LEU A:1358 , ILE A:1359 , LEU A:1363 , MET A:1364 , HIS A:1468 , HOH A:7699
BINDING SITE FOR RESIDUE NLX A 1
14
BC5
SOFTWARE
LEU B:2097 , GLY B:2142 , GLY B:2143 , SER B:2221 , VAL B:2254 , LEU B:2304 , PRO B:2317 , LEU B:2318 , ILE B:2359 , LEU B:2363 , MET B:2364 , MET B:2425 , HIS B:2468 , HOH B:7002
BINDING SITE FOR RESIDUE NLX B 2
15
BC6
SOFTWARE
GLY C:3142 , GLY C:3143 , SER C:3221 , ALA C:3222 , VAL C:3254 , LEU C:3255 , LEU C:3304 , PRO C:3317 , LEU C:3318 , ILE C:3359 , MET C:3364 , LEU C:3388 , PHE C:3426
BINDING SITE FOR RESIDUE NLX C 3
16
BC7
SOFTWARE
LEU D:4097 , PHE D:4101 , GLY D:4142 , GLY D:4143 , GLU D:4220 , SER D:4221 , LEU D:4304 , LEU D:4358 , ILE D:4359 , LEU D:4363 , MET D:4364 , HIS D:4468 , HOH D:7001
BINDING SITE FOR RESIDUE NLX D 4
17
BC8
SOFTWARE
LEU E:5097 , PHE E:5101 , GLY E:5142 , GLY E:5143 , GLU E:5220 , SER E:5221 , LEU E:5304 , LEU E:5318 , ILE E:5359 , LEU E:5363 , MET E:5364 , PHE E:5426 , HIS E:5468
BINDING SITE FOR RESIDUE NLX E 5
18
BC9
SOFTWARE
LEU F:6097 , GLY F:6142 , GLY F:6143 , SER F:6221 , ALA F:6222 , VAL F:6254 , LEU F:6255 , LEU F:6304 , LEU F:6318 , ILE F:6359 , LEU F:6363 , MET F:6364 , LEU F:6388 , MET F:6425 , HOH F:7502
BINDING SITE FOR RESIDUE NLX F 6
19
CC1
SOFTWARE
PHE G:1101 , GLY G:1142 , GLY G:1143 , VAL G:1146 , GLU G:1220 , SER G:1221 , LEU G:1304 , LEU G:1358 , ILE G:1359 , LEU G:1363 , MET G:1364 , HIS G:1468
BINDING SITE FOR RESIDUE NLX G 1
20
CC2
SOFTWARE
LEU H:2097 , PHE H:2101 , GLY H:2141 , GLY H:2142 , GLY H:2143 , GLU H:2220 , SER H:2221 , LEU H:2304 , ILE H:2359 , LEU H:2363 , MET H:2364 , HOH H:7211
BINDING SITE FOR RESIDUE NLX H 2
21
CC3
SOFTWARE
GLY I:3142 , GLY I:3143 , SER I:3221 , SER I:3247 , VAL I:3254 , LEU I:3255 , LEU I:3304 , PRO I:3317 , LEU I:3318 , ILE I:3359 , MET I:3364 , PHE I:3426 , HIS I:3468 , HOH I:7519
BINDING SITE FOR RESIDUE NLX I 3
22
CC4
SOFTWARE
ALA J:4093 , GLY J:4142 , GLY J:4143 , SER J:4221 , LEU J:4304 , ILE J:4359 , LEU J:4363 , MET J:4364 , HIS J:4468
BINDING SITE FOR RESIDUE NLX J 4
23
CC5
SOFTWARE
GLY K:5142 , GLY K:5143 , SER K:5221 , VAL K:5254 , LEU K:5304 , LEU K:5318 , ILE K:5359 , LEU K:5363 , MET K:5364 , MET K:5425 , HIS K:5468 , HOH K:8022
BINDING SITE FOR RESIDUE NLX K 5
24
CC6
SOFTWARE
ALA L:6093 , LEU L:6097 , GLY L:6142 , GLY L:6143 , VAL L:6146 , GLU L:6220 , SER L:6221 , LEU L:6304 , LEU L:6318 , LEU L:6358 , ILE L:6359 , LEU L:6363 , HIS L:6468
BINDING SITE FOR RESIDUE NLX L 6
[
close Site info
]
SAPs(SNPs)/Variants
(4, 48)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014314 (S6075N, chain A/G/B/H/C/I/D/J/E/K/F/L, )
2: VAR_046954 (G6143E, chain A/G/B/H/C/I/D/J/E/K/F/L, )
3: VAR_014594 (R6199H, chain A/G/B/H/C/I/D/J/E/K/F/L, )
4: VAR_014595 (D6203E, chain A/G/B/H/C/I/D/J/E/K/F/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014314
S
75
N
EST1_HUMAN
Polymorphism
2307240
A/G
B/H
C/I
D/J
E/K
F/L
S
1075
2075
3075
4075
5075
6075
N
2
UniProt
VAR_046954
G
143
E
EST1_HUMAN
Polymorphism
71647871
A/G
B/H
C/I
D/J
E/K
F/L
G
1143
2143
3143
4143
5143
6143
E
3
UniProt
VAR_014594
R
199
H
EST1_HUMAN
Polymorphism
2307243
A/G
B/H
C/I
D/J
E/K
F/L
R
1199
2199
3199
4199
5199
6199
H
4
UniProt
VAR_014595
D
203
E
EST1_HUMAN
Polymorphism
2307227
A/G
B/H
C/I
D/J
E/K
F/L
D
1203
2203
3203
4203
5203
6203
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:1114-1124,B:2114-2124,C:3114-312...)
2: CARBOXYLESTERASE_B_1 (A:1208-1223,B:2208-2223,C:3208-322...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
EST1_HUMAN
114-124
12
A:1114-1124
B:2114-2124
C:3114-3124
D:4114-4124
E:5114-5124
F:6114-6124
G:1114-1124
H:2114-2124
I:3114-3124
J:4114-4124
K:5114-5124
L:6114-6124
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
EST1_HUMAN
208-223
12
A:1208-1223
B:2208-2223
C:3208-3223
D:4208-4223
E:5208-5223
F:6208-6223
G:1208-1223
H:2208-2223
I:3208-3223
J:4208-4223
K:5208-5223
L:6208-6223
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1mx9a_ (A:)
1b: SCOP_d1mx9b_ (B:)
1c: SCOP_d1mx9c_ (C:)
1d: SCOP_d1mx9d_ (D:)
1e: SCOP_d1mx9e_ (E:)
1f: SCOP_d1mx9f_ (F:)
1g: SCOP_d1mx9g_ (G:)
1h: SCOP_d1mx9h_ (H:)
1i: SCOP_d1mx9i_ (I:)
1j: SCOP_d1mx9j_ (J:)
1k: SCOP_d1mx9k_ (K:)
1l: SCOP_d1mx9l_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
Mammalian carboxylesterase (liver carboxylesterase I)
(7)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1mx9a_
A:
1b
d1mx9b_
B:
1c
d1mx9c_
C:
1d
d1mx9d_
D:
1e
d1mx9e_
E:
1f
d1mx9f_
F:
1g
d1mx9g_
G:
1h
d1mx9h_
H:
1i
d1mx9i_
I:
1j
d1mx9j_
J:
1k
d1mx9k_
K:
1l
d1mx9l_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1mx9C00 (C:3022-3553)
1b: CATH_1mx9E00 (E:5022-5553)
1c: CATH_1mx9F00 (F:6022-6553)
1d: CATH_1mx9H00 (H:2022-2553)
1e: CATH_1mx9I00 (I:3022-3553)
1f: CATH_1mx9K00 (K:5022-5553)
1g: CATH_1mx9L00 (L:6022-6553)
1h: CATH_1mx9A00 (A:1021-1553)
1i: CATH_1mx9B00 (B:2021-2553)
1j: CATH_1mx9G00 (G:1021-1553)
1k: CATH_1mx9J00 (J:4021-4553)
1l: CATH_1mx9D00 (D:4021-4554)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1mx9C00
C:3022-3553
1b
1mx9E00
E:5022-5553
1c
1mx9F00
F:6022-6553
1d
1mx9H00
H:2022-2553
1e
1mx9I00
I:3022-3553
1f
1mx9K00
K:5022-5553
1g
1mx9L00
L:6022-6553
1h
1mx9A00
A:1021-1553
1i
1mx9B00
B:2021-2553
1j
1mx9G00
G:1021-1553
1k
1mx9J00
J:4021-4553
1l
1mx9D00
D:4021-4554
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (520 KB)
Header - Biol.Unit 1
Biol.Unit 2 (517 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1MX9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help