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1MWU
Asym. Unit
Info
Asym.Unit (212 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
STRUCTURE OF METHICILLIN ACYL-PENICILLIN BINDING PROTEIN 2A FROM METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS STRAIN 27R AT 2.60 A RESOLUTION.
Authors
:
D. C. Lim, N. C. J. Strynadka
Date
:
01 Oct 02 (Deposition) - 06 Nov 02 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Penicillin Binding Protein, Beta-Lactam, D, D-Transpeptidase, D, D- Carboxypeptidase, Methicillin, Biosynthetic Protein
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Reference
:
D. Lim, N. C. Strynadka
Structural Basis For The Beta Lactam Resistance Of Pbp2A From Methicillin-Resistant Staphylococcus Aureus.
Nat. Struct. Biol. V. 9 870 2002
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: (2R,4S)-2-[(1R)-1-{[(2,6-DIMETHOXY... (7EPa)
1b: (2R,4S)-2-[(1R)-1-{[(2,6-DIMETHOXY... (7EPb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
7EP
2
Ligand/Ion
(2R,4S)-2-[(1R)-1-{[(2,6-DIMETHOXYPHENYL)CARBONYL]AMINO}-2-OXOETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID
2
CD
5
Ligand/Ion
CADMIUM ION
3
CL
4
Ligand/Ion
CHLORIDE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:403 , TYR A:446 , SER A:462 , ASN A:464 , GLN A:521 , HIS A:583 , SER A:598 , GLY A:599 , THR A:600 , GLU A:602 , MET A:641 , ALA A:642 , HOH A:820
BINDING SITE FOR RESIDUE 7EP A 701
02
AC2
SOFTWARE
HIS A:143 , GLU A:145 , CL A:704 , HOH A:811 , GLU B:145 , CD B:702
BINDING SITE FOR RESIDUE CD A 702
03
AC3
SOFTWARE
GLY A:135 , HIS A:311 , ASP B:209 , CL B:707
BINDING SITE FOR RESIDUE CD A 703
04
AC4
SOFTWARE
GLU A:145 , THR A:300 , CD A:702 , GLU B:145
BINDING SITE FOR RESIDUE CL A 704
05
AC5
SOFTWARE
GLY B:402 , SER B:403 , TYR B:446 , SER B:462 , ASN B:464 , TYR B:519 , GLN B:521 , SER B:598 , ALA B:642
BINDING SITE FOR RESIDUE 7EP B 701
06
AC6
SOFTWARE
GLU A:145 , CD A:702 , HOH A:819 , HIS B:143 , GLU B:145 , CL B:705
BINDING SITE FOR RESIDUE CD B 702
07
AC7
SOFTWARE
ASP A:209 , GLY B:135 , GLN B:137 , HIS B:311 , CL B:706
BINDING SITE FOR RESIDUE CD B 703
08
AC8
SOFTWARE
LYS A:434 , ASN B:569 , ASP B:573
BINDING SITE FOR RESIDUE CD B 704
09
AC9
SOFTWARE
GLU A:145 , HOH A:819 , HIS B:143 , GLU B:145 , THR B:300 , CD B:702
BINDING SITE FOR RESIDUE CL B 705
10
BC1
SOFTWARE
GLY B:135 , GLN B:137 , HIS B:311 , CD B:703
BINDING SITE FOR RESIDUE CL B 706
11
BC2
SOFTWARE
GLY A:135 , HIS A:311 , CD A:703 , GLN B:207 , ASP B:209
BINDING SITE FOR RESIDUE CL B 707
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1mwua1 (A:27-138)
1b: SCOP_d1mwub1 (B:27-138)
2a: SCOP_d1mwua2 (A:139-327)
2b: SCOP_d1mwub2 (B:139-327)
3a: SCOP_d1mwua3 (A:328-668)
3b: SCOP_d1mwub3 (B:328-668)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
Penicillin binding protein 2a (PBP2A), N-terminal domain
(6)
Protein domain
:
Penicillin binding protein 2a (PBP2A), N-terminal domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
1a
d1mwua1
A:27-138
1b
d1mwub1
B:27-138
Fold
:
Penicillin binding protein dimerisation domain
(32)
Superfamily
:
Penicillin binding protein dimerisation domain
(32)
Family
:
Penicillin binding protein dimerisation domain
(12)
Protein domain
:
Penicillin binding protein 2a (PBP2A), middle domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
2a
d1mwua2
A:139-327
2b
d1mwub2
B:139-327
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Penicillin binding protein 2a (PBP2A), C-terminal domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
3a
d1mwua3
A:328-668
3b
d1mwub3
B:328-668
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1mwuA03 (A:168-237)
1b: CATH_1mwuB03 (B:168-237)
2a: CATH_1mwuB04 (B:327-665)
2b: CATH_1mwuA04 (A:327-665)
3a: CATH_1mwuA02 (A:136-167,A:238-326)
3b: CATH_1mwuB02 (B:136-167,B:238-326)
4a: CATH_1mwuB01 (B:27-135)
4b: CATH_1mwuA01 (A:27-135)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein L30; Chain: A,
(164)
Homologous Superfamily
:
Penicillin-binding protein 2a; domain 3
(5)
Staphylococcus aureus. Organism_taxid: 1280.
(4)
1a
1mwuA03
A:168-237
1b
1mwuB03
B:168-237
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Staphylococcus aureus. Organism_taxid: 1280.
(5)
2a
1mwuB04
B:327-665
2b
1mwuA04
A:327-665
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Penicillin-binding protein 2a (Domain 2)
(7)
Homologous Superfamily
:
Penicillin-binding protein 2a (Domain 2)
(7)
Staphylococcus aureus. Organism_taxid: 1280.
(4)
3a
1mwuA02
A:136-167,A:238-326
3b
1mwuB02
B:136-167,B:238-326
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
NTF2-like; domain 1
(5)
Staphylococcus aureus. Organism_taxid: 1280.
(4)
4a
1mwuB01
B:27-135
4b
1mwuA01
A:27-135
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Transpeptidase_1mwuB01 (B:345-658)
1b: PFAM_Transpeptidase_1mwuB02 (B:345-658)
2a: PFAM_MecA_N_1mwuB03 (B:27-140)
2b: PFAM_MecA_N_1mwuB04 (B:27-140)
3a: PFAM_PBP_dimer_1mwuB05 (B:146-313)
3b: PFAM_PBP_dimer_1mwuB06 (B:146-313)
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Clans
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)
(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Beta-lactamase
(210)
Family
:
Transpeptidase
(31)
Staphylococcus aureus
(10)
1a
Transpeptidase-1mwuB01
B:345-658
1b
Transpeptidase-1mwuB02
B:345-658
Clan
:
NTF2
(66)
Family
:
MecA_N
(5)
Staphylococcus aureus
(5)
2a
MecA_N-1mwuB03
B:27-140
2b
MecA_N-1mwuB04
B:27-140
Clan
:
no clan defined [family: PBP_dimer]
(15)
Family
:
PBP_dimer
(15)
Staphylococcus aureus
(5)
3a
PBP_dimer-1mwuB05
B:146-313
3b
PBP_dimer-1mwuB06
B:146-313
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