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1MWS
Biol. Unit 2
Info
Asym.Unit (220 KB)
Biol.Unit 1 (111 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
STRUCTURE OF NITROCEFIN ACYL-PENICILLIN BINDING PROTEIN 2A FROM METHICILLIN RESISTANT STAPHYLOCOCCUS AUREUS STRAIN 27R AT 2.00 A RESOLUTION.
Authors
:
D. C. Lim, N. C. J. Strynadka
Date
:
01 Oct 02 (Deposition) - 06 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Penicillin Binding Protein, Beta-Lactam, D, D- Transpeptidase, D-Carboxypeptidase, Nitrocefin, Biosynthetic Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. Lim, N. C. Strynadka
Structural Basis For The Beta Lactam Resistance Of Pbp2A From Methicillin-Resistant Staphylococcus Aureus.
Nat. Struct. Biol. V. 9 870 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: NITROCEFIN ACYL-SERINE (NC1a)
3b: NITROCEFIN ACYL-SERINE (NC1b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NC1
1
Mod. Amino Acid
NITROCEFIN ACYL-SERINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:143 , GLU A:145 , CL A:1010 , HOH A:1016 , GLU B:145
BINDING SITE FOR RESIDUE CD A 1001
02
AC2
SOFTWARE
GLU A:145 , HIS B:143 , GLU B:145 , CL B:1009 , HOH B:1056
BINDING SITE FOR RESIDUE CD B 1002
03
AC3
SOFTWARE
ASP A:209 , GLY B:135 , HIS B:311 , CL B:1012 , HOH B:1082
BINDING SITE FOR RESIDUE CD A 1003
04
AC4
SOFTWARE
HIS A:232 , HOH A:1149 , HOH A:1160 , GLU B:378
BINDING SITE FOR RESIDUE CD A 1004
05
AC5
SOFTWARE
GLY A:135 , HIS A:311 , CL A:1011 , HOH A:1024 , ASP B:209
BINDING SITE FOR RESIDUE CD A 1005
06
AC6
SOFTWARE
GLU A:59 , HIS B:232 , HOH B:1140
BINDING SITE FOR RESIDUE CD B 1006
07
AC7
SOFTWARE
ASN B:569 , ASP B:573 , HOH B:1027 , HOH B:1036 , HOH B:1137
BINDING SITE FOR RESIDUE CD B 1007
08
AC8
SOFTWARE
ASP A:320 , GLU B:150
BINDING SITE FOR RESIDUE CD A 1008
09
AC9
SOFTWARE
GLU A:145 , GLU B:145 , ARG B:298 , THR B:300 , CD B:1002
BINDING SITE FOR RESIDUE CL B 1009
10
BC1
SOFTWARE
THR A:300 , CD A:1001 , GLU B:145
BINDING SITE FOR RESIDUE CL A 1010
11
BC2
SOFTWARE
GLN A:137 , GLN A:140 , HIS A:311 , CD A:1005 , HOH A:1079 , GLN B:207
BINDING SITE FOR RESIDUE CL A 1011
12
BC3
SOFTWARE
GLN A:207 , CD A:1003 , GLY B:135 , GLN B:137 , GLN B:140 , HIS B:311
BINDING SITE FOR RESIDUE CL B 1012
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1mwsa1 (A:27-138)
1b: SCOP_d1mwsb1 (B:27-138)
2a: SCOP_d1mwsa2 (A:139-327)
2b: SCOP_d1mwsb2 (B:139-327)
3a: SCOP_d1mwsa3 (A:328-668)
3b: SCOP_d1mwsb3 (B:328-668)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
Penicillin binding protein 2a (PBP2A), N-terminal domain
(6)
Protein domain
:
Penicillin binding protein 2a (PBP2A), N-terminal domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
1a
d1mwsa1
A:27-138
1b
d1mwsb1
B:27-138
Fold
:
Penicillin binding protein dimerisation domain
(32)
Superfamily
:
Penicillin binding protein dimerisation domain
(32)
Family
:
Penicillin binding protein dimerisation domain
(12)
Protein domain
:
Penicillin binding protein 2a (PBP2A), middle domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
2a
d1mwsa2
A:139-327
2b
d1mwsb2
B:139-327
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Penicillin binding protein 2a (PBP2A), C-terminal domain
(6)
Staphylococcus aureus [TaxId: 1280]
(6)
3a
d1mwsa3
A:328-668
3b
d1mwsb3
B:328-668
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1mwsA03 (A:168-237)
1b: CATH_1mwsB03 (B:168-237)
2a: CATH_1mwsB04 (B:327-665)
2b: CATH_1mwsA04 (A:327-665)
3a: CATH_1mwsA02 (A:136-167,A:238-326)
3b: CATH_1mwsB02 (B:136-167,B:238-326)
4a: CATH_1mwsB01 (B:27-135)
4b: CATH_1mwsA01 (A:27-135)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein L30; Chain: A,
(164)
Homologous Superfamily
:
Penicillin-binding protein 2a; domain 3
(5)
Staphylococcus aureus. Organism_taxid: 1280.
(4)
1a
1mwsA03
A:168-237
1b
1mwsB03
B:168-237
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Staphylococcus aureus. Organism_taxid: 1280.
(5)
2a
1mwsB04
B:327-665
2b
1mwsA04
A:327-665
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Penicillin-binding protein 2a (Domain 2)
(7)
Homologous Superfamily
:
Penicillin-binding protein 2a (Domain 2)
(7)
Staphylococcus aureus. Organism_taxid: 1280.
(4)
3a
1mwsA02
A:136-167,A:238-326
3b
1mwsB02
B:136-167,B:238-326
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
NTF2-like; domain 1
(5)
Staphylococcus aureus. Organism_taxid: 1280.
(4)
4a
1mwsB01
B:27-135
4b
1mwsA01
A:27-135
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Transpeptidase_1mwsB01 (B:345-658)
1b: PFAM_Transpeptidase_1mwsB02 (B:345-658)
2a: PFAM_MecA_N_1mwsB03 (B:27-140)
2b: PFAM_MecA_N_1mwsB04 (B:27-140)
3a: PFAM_PBP_dimer_1mwsB05 (B:146-313)
3b: PFAM_PBP_dimer_1mwsB06 (B:146-313)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta-lactamase
(210)
Family
:
Transpeptidase
(31)
Staphylococcus aureus
(10)
1a
Transpeptidase-1mwsB01
B:345-658
1b
Transpeptidase-1mwsB02
B:345-658
Clan
:
NTF2
(66)
Family
:
MecA_N
(5)
Staphylococcus aureus
(5)
2a
MecA_N-1mwsB03
B:27-140
2b
MecA_N-1mwsB04
B:27-140
Clan
:
no clan defined [family: PBP_dimer]
(15)
Family
:
PBP_dimer
(15)
Staphylococcus aureus
(5)
3a
PBP_dimer-1mwsB05
B:146-313
3b
PBP_dimer-1mwsB06
B:146-313
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