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1MWA
Biol. Unit 1
Info
Asym.Unit (291 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (140 KB)
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(1)
Title
:
2C/H-2KBM3/DEV8 ALLOGENEIC COMPLEX
Authors
:
J. G. Luz, M. D. Huang, K. C. Garcia, M. G. Rudolph, L. Teyton, I. A. Wilson
Date
:
27 Sep 02 (Deposition) - 27 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,H,I,L,M,P,Q
Biol. Unit 1: A,B,H,L,P (1x)
Biol. Unit 2: C,D,I,M,Q (1x)
Keywords
:
Ig Domain, Antigen Recognition, Complementarity Determining Region, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. G. Luz, M. D. Huang, K. C. Garcia, M. G. Rudolph, L. Teyton, I. A. Wilso
Structural Comparison Of Allogeneic And Syngeneic T Cell Receptor-Peptide-Major Histocompatibility Complex Complexes A Buried Alloreactive Mutation Subtly Alters Peptide Presentation Substantially Increasing V(Beta) Interactions.
J. Exp. Med. V. 195 1175 2002
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
GOL
2
Ligand/Ion
GLYCEROL
4
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC8 (SOFTWARE)
14: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:65 , SER A:67 , ASN A:70 , NAG A:804 , HOH A:950 , GLU B:222
BINDING SITE FOR RESIDUE NAG A 803
02
AC2
SOFTWARE
NAG A:803 , GLU B:222 , LYS B:224
BINDING SITE FOR RESIDUE NAG A 804
03
AC3
SOFTWARE
SER A:158 , GLY A:159 , ASN A:185 , NAG A:806 , HOH A:976
BINDING SITE FOR RESIDUE NAG A 805
04
AC4
SOFTWARE
NAG A:805 , BMA A:807
BINDING SITE FOR RESIDUE NAG A 806
05
AC5
SOFTWARE
NAG A:806
BINDING SITE FOR RESIDUE BMA A 807
06
AC6
SOFTWARE
ARG A:134 , GLU B:240 , ARG H:44 , TRP H:60
BINDING SITE FOR RESIDUE GOL A 902
07
BC1
SOFTWARE
ASN B:24
BINDING SITE FOR RESIDUE NAG B 808
08
BC2
SOFTWARE
TRP B:162 , GLN B:213 , GLN B:215 , ASN B:236 , NAG B:810
BINDING SITE FOR RESIDUE NAG B 809
09
BC3
SOFTWARE
NAG B:809 , BMA B:811
BINDING SITE FOR RESIDUE NAG B 810
10
BC4
SOFTWARE
NAG B:810
BINDING SITE FOR RESIDUE BMA B 811
11
BC5
SOFTWARE
ASN H:176 , LEU H:180 , NAG H:813
BINDING SITE FOR RESIDUE NAG H 812
12
BC6
SOFTWARE
LEU H:180 , NAG H:812
BINDING SITE FOR RESIDUE NAG H 813
13
BC8
SOFTWARE
LEU H:206 , ARG H:234 , GLN H:242 , TYR L:10 , SER L:11 , ARG L:97 , MET L:99
BINDING SITE FOR RESIDUE GOL L 901
14
BC9
SOFTWARE
THR A:29 , HOH A:931 , GLU P:1
BINDING SITE FOR RESIDUE ACY P 1001
[
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]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain L, )
2: VAR_B2MG_MOUSE_003 (K44E, chain L, )
3: VAR_B2MG_MOUSE_004 (R81T, chain L, )
4: VAR_B2MG_MOUSE_005 (D85D, chain L, )
5: VAR_B2MG_MOUSE_006 (D85V, chain L, )
6: VAR_TCB2_MOUSE_001 (K166R, chain B, )
7: VAR_TCB2_MOUSE_002 (Y190H, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
L
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
L
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
L
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
L
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
L
D
85
V
6
UniProt
VAR_TCB2_MOUSE_001
*
K
50
R
TCB2_MOUSE
---
---
B
K
166
R
7
UniProt
VAR_TCB2_MOUSE_002
*
Y
70
H
TCB2_MOUSE
---
---
B
Y
190
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (H:257-263)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
L:78-84
-
HA1B_MOUSE
278-284
1
H:257-263
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(7, 14)
Info
All SCOP Domains
1a: SCOP_d1mwal_ (L:)
1b: SCOP_d1mwam_ (M:)
2a: SCOP_d1mwah1 (H:182-274)
2b: SCOP_d1mwai1 (I:182-274)
3a: SCOP_d1mwaa2 (A:118-213)
3b: SCOP_d1mwac2 (C:118-213)
4a: SCOP_d1mwab2 (B:118-247)
4b: SCOP_d1mwad2 (D:118-247)
5a: SCOP_d1mwaa1 (A:1-117)
5b: SCOP_d1mwac1 (C:1-117)
6a: SCOP_d1mwab1 (B:1-117)
6b: SCOP_d1mwad1 (D:1-117)
7a: SCOP_d1mwah2 (H:1-181)
7b: SCOP_d1mwai2 (I:1-181)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d1mwal_
L:
1b
d1mwam_
M:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d1mwah1
H:182-274
2b
d1mwai1
I:182-274
Protein domain
:
T-cell antigen receptor
(81)
Mouse (Mus musculus), alpha-chain [TaxId: 10090]
(11)
3a
d1mwaa2
A:118-213
3b
d1mwac2
C:118-213
Mouse (Mus musculus), beta-chain [TaxId: 10090]
(15)
4a
d1mwab2
B:118-247
4b
d1mwad2
D:118-247
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Mouse (Mus musculus), alpha-chain [TaxId: 10090]
(21)
5a
d1mwaa1
A:1-117
5b
d1mwac1
C:1-117
Mouse (Mus musculus), beta-chain [TaxId: 10090]
(28)
6a
d1mwab1
B:1-117
6b
d1mwad1
D:1-117
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2KB [TaxId: 10090]
(42)
7a
d1mwah2
H:1-181
7b
d1mwai2
I:1-181
[
close SCOP info
]
CATH Domains
(2, 14)
Info
all CATH domains
1a: CATH_1mwaH01 (H:1-181)
1b: CATH_1mwaI01 (I:1-181)
2a: CATH_1mwaL00 (L:1-99)
2b: CATH_1mwaH02 (H:182-274)
2c: CATH_1mwaI02 (I:182-274)
2d: CATH_1mwaB01 (B:3-117)
2e: CATH_1mwaD01 (D:3-117)
2f: CATH_1mwaA02 (A:117-213)
2g: CATH_1mwaC02 (C:117-213)
2h: CATH_1mwaB02 (B:118-246)
2i: CATH_1mwaD02 (D:118-246)
2j: CATH_1mwaA01 (A:1-116)
2k: CATH_1mwaC01 (C:1-116)
2l: CATH_1mwaM00 (M:1-99)
View:
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Classes
(
)
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1mwaH01
H:1-181
1b
1mwaI01
I:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1mwaL00
L:1-99
2b
1mwaH02
H:182-274
2c
1mwaI02
I:182-274
2d
1mwaB01
B:3-117
2e
1mwaD01
D:3-117
2f
1mwaA02
A:117-213
2g
1mwaC02
C:117-213
2h
1mwaB02
B:118-246
2i
1mwaD02
D:118-246
2j
1mwaA01
A:1-116
2k
1mwaC01
C:1-116
2l
1mwaM00
M:1-99
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (291 KB)
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