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1MW0
Asym. Unit
Info
Asym.Unit (121 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
AMYLOSUCRASE MUTANT E328Q CO-CRYSTALLIZED WITH MALTOHEPTAOSE THEN SOAKED WITH MALTOHEPTAOSE.
Authors
:
L. K. Skov, O. Mirza, D. Sprogoe, I. Dar, M. Remaud-Simeon, C. Albenne, P. Monsan, M. Gajhede
Date
:
27 Sep 02 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
(Beta-Alpha)8 Barrel, Protein-Sugar Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. K. Skov, O. Mirza, D. Sprogoe, I. Dar, M. Remaud-Simeon, C. Albenne, P. Monsan, M. Gajhede
Oligosaccharide And Sucrose Complexes Of Amylosucrase. Structural Implications For The Polymerase Activity
J. Biol. Chem. V. 277 47741 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
3k: ALPHA-D-GLUCOSE (GLCk)
3l: ALPHA-D-GLUCOSE (GLCl)
3m: ALPHA-D-GLUCOSE (GLCm)
3n: ALPHA-D-GLUCOSE (GLCn)
3o: ALPHA-D-GLUCOSE (GLCo)
3p: ALPHA-D-GLUCOSE (GLCp)
3q: ALPHA-D-GLUCOSE (GLCq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
3
GLC
17
Ligand/Ion
ALPHA-D-GLUCOSE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:144 , TYR A:147 , HIS A:187 , PHE A:250 , ARG A:284 , ASP A:286 , GLN A:328 , HIS A:392 , ASP A:393 , ARG A:509 , GLC A:712 , HOH A:830
BINDING SITE FOR RESIDUE GLC A 711
02
AC2
SOFTWARE
ILE A:228 , ALA A:287 , PHE A:290 , GLN A:328 , ASP A:393 , ASP A:394 , ARG A:446 , GLC A:711 , GLC A:713 , HOH A:908
BINDING SITE FOR RESIDUE GLC A 712
03
AC3
SOFTWARE
ARG A:226 , ILE A:228 , ASP A:394 , GLY A:396 , ARG A:446 , GLC A:712 , GLC A:714 , HOH A:969 , HOH A:1076 , HOH A:1136
BINDING SITE FOR RESIDUE GLC A 713
04
AC4
SOFTWARE
ILE A:330 , VAL A:331 , TRP A:397 , THR A:398 , ARG A:415 , ASP A:444 , GLC A:713 , GLC A:715 , HOH A:819
BINDING SITE FOR RESIDUE GLC A 714
05
AC5
SOFTWARE
PHE A:399 , ASP A:401 , ARG A:415 , GLC A:714 , GLC A:716 , HOH A:912 , HOH A:920
BINDING SITE FOR RESIDUE GLC A 715
06
AC6
SOFTWARE
GLC A:715 , GLC A:717 , HOH A:1064 , HOH A:1091 , HOH A:1108 , HOH A:1115 , HOH A:1196
BINDING SITE FOR RESIDUE GLC A 716
07
AC7
SOFTWARE
LYS A:8 , SER A:33 , ASP A:37 , ARG A:226 , GLC A:716 , HOH A:1108 , HOH A:1153
BINDING SITE FOR RESIDUE GLC A 717
08
AC8
SOFTWARE
ASN A:424 , ASP A:427 , GLY A:428 , SER A:429 , ARG A:432 , GLC A:722
BINDING SITE FOR RESIDUE GLC A 721
09
AC9
SOFTWARE
ARG A:425 , ASP A:427 , GLY A:428 , GLC A:721 , GLC A:723
BINDING SITE FOR RESIDUE GLC A 722
10
BC1
SOFTWARE
GLY A:428 , GLC A:722 , GLC A:724
BINDING SITE FOR RESIDUE GLC A 723
11
BC2
SOFTWARE
ARG A:364 , GLU A:583 , GLC A:723 , GLC A:725 , HOH A:1191
BINDING SITE FOR RESIDUE GLC A 724
12
BC3
SOFTWARE
ALA A:362 , THR A:363 , ARG A:364 , GLU A:365 , PHE A:417 , GLC A:724 , GLC A:726 , HOH A:994 , HOH A:1061 , HOH A:1082
BINDING SITE FOR RESIDUE GLC A 725
13
BC4
SOFTWARE
THR A:363 , HIS A:414 , PHE A:417 , PHE A:426 , GLC A:725 , GLC A:727 , HOH A:1160
BINDING SITE FOR RESIDUE GLC A 726
14
BC5
SOFTWARE
ASP A:413 , GLC A:726 , HOH A:1170 , HOH A:1207
BINDING SITE FOR RESIDUE GLC A 727
15
BC6
SOFTWARE
GLC A:732
BINDING SITE FOR RESIDUE BGC A 731
16
BC7
SOFTWARE
THR A:558 , ASN A:560 , BGC A:731 , GLC A:733 , HOH A:1042 , HOH A:1092
BINDING SITE FOR RESIDUE GLC A 732
17
BC8
SOFTWARE
PHE A:559 , ASN A:560 , THR A:592 , MET A:596 , GLC A:732 , GLC A:734 , HOH A:843
BINDING SITE FOR RESIDUE GLC A 733
18
BC9
SOFTWARE
ASN A:207 , MET A:217 , ASN A:258 , SER A:260 , ASN A:562 , GLC A:733
BINDING SITE FOR RESIDUE GLC A 734
19
CC1
SOFTWARE
ARG A:425 , TYR A:438 , CYS A:445
BINDING SITE FOR RESIDUE DTT A 703
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1mw0a1 (A:555-628)
2a: SCOP_d1mw0a2 (A:1-554)
View:
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Classes
(
)
(
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Folds
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(
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Superfamilies
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Amylosucrase
(10)
Neisseria polysaccharea [TaxId: 489]
(10)
1a
d1mw0a1
A:555-628
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Amylosucrase
(10)
Neisseria polysaccharea [TaxId: 489]
(10)
2a
d1mw0a2
A:1-554
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Alpha_amylase_1mw0A01 (A:110-426)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Neisseria polysaccharea
(8)
1a
Alpha-amylase-1mw0A01
A:110-426
[
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Atom Selection
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Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (121 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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