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1MUQ
Biol. Unit 2
Info
Asym.Unit (129 KB)
Biol.Unit 1 (239 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF RATTLESNAKE VENOM COMPLEXED WITH THIODIGALACTOSIDE
Authors
:
J. R. Walker, B. Nagar, N. M. Young, T. Hirama, J. M. Rini
Date
:
24 Sep 02 (Deposition) - 01 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: A,B,C,D,E (1x)
Keywords
:
C-Type Lectin, Protein-Carbohydrate Complex, Decamer, Calcium Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, B. Nagar, N. M. Young, T. Hirama, J. M. Rini
X-Ray Crystal Structure Of A Galactose-Specific C-Type Lectin Possessing A Novel Decameric Quaternary Structure.
Biochemistry V. 43 3783 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
4a: THIODIGALACTOSIDE (TDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
3
NA
-1
Ligand/Ion
SODIUM ION
4
TDG
1
Ligand/Ion
THIODIGALACTOSIDE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:96 , ASP A:98 , GLU A:104 , ASN A:119 , ASP A:120 , CA A:201 , HOH A:310 , HOH A:319
BINDING SITE FOR RESIDUE GAL A 301
02
AC2
SOFTWARE
GLN C:96 , ASP C:98 , GLU C:104 , ASN C:119 , ASP C:120 , CA C:203 , HOH C:320 , HOH C:322 , HOH C:329
BINDING SITE FOR RESIDUE GAL C 304
03
AC3
SOFTWARE
GLN E:96 , ASP E:98 , TYR E:100 , GLU E:104 , ASN E:119 , ASP E:120 , CA E:205 , HOH E:321
BINDING SITE FOR RESIDUE GAL E 305
04
AC4
SOFTWARE
GLN A:96 , ASP A:98 , GLU A:104 , ASN A:119 , ASP A:120 , GAL A:301
BINDING SITE FOR RESIDUE CA A 201
05
AC5
SOFTWARE
GLN B:96 , ASP B:98 , GLU B:104 , ASN B:119 , ASP B:120 , TDG B:302
BINDING SITE FOR RESIDUE CA B 202
06
AC6
SOFTWARE
GLN C:96 , ASP C:98 , GLU C:104 , ASN C:119 , ASP C:120 , GAL C:304
BINDING SITE FOR RESIDUE CA C 203
07
AC7
SOFTWARE
GLN D:96 , ASP D:98 , GLU D:104 , ASN D:119 , ASP D:120
BINDING SITE FOR RESIDUE CA D 204
08
AC8
SOFTWARE
GLN E:96 , ASP E:98 , GLU E:104 , ASN E:119 , ASP E:120 , GAL E:305
BINDING SITE FOR RESIDUE CA E 205
09
AC9
SOFTWARE
TYR A:15 , SER A:42 , HIS A:44 , GLN A:132 , HOH A:306
BINDING SITE FOR RESIDUE NA A 206
10
BC1
SOFTWARE
TYR B:15 , SER B:42 , GLN B:132
BINDING SITE FOR RESIDUE NA B 207
11
BC2
SOFTWARE
LEU C:13 , TYR C:15 , SER C:42 , GLN C:132 , HOH C:311
BINDING SITE FOR RESIDUE NA C 208
12
BC3
SOFTWARE
LEU D:13 , TYR D:15 , SER D:42 , GLN D:132
BINDING SITE FOR RESIDUE NA D 209
13
BC4
SOFTWARE
LEU E:13 , TYR E:15 , SER E:42 , GLN E:132 , HOH E:314
BINDING SITE FOR RESIDUE NA E 210
14
BC5
SOFTWARE
GLN B:96 , ASP B:98 , TYR B:100 , GLU B:104 , ASN B:119 , ASP B:120 , CA B:202 , HOH B:312 , TYR C:34 , LYS C:35 , LEU D:5
BINDING SITE FOR RESIDUE TDG B 302
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:10-132,B:10-132,C:10-132,D:10-13...)
2: C_TYPE_LECTIN_1 (A:106-131,B:106-131,C:106-131,D:10...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
LECG_CROAT
10-132
5
A:10-132
B:10-132
C:10-132
D:10-132
E:10-132
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LECG_CROAT
106-131
5
A:106-131
B:106-131
C:106-131
D:106-131
E:106-131
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1muqa_ (A:)
1b: SCOP_d1muqb_ (B:)
1c: SCOP_d1muqc_ (C:)
1d: SCOP_d1muqd_ (D:)
1e: SCOP_d1muqe_ (E:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Galactose-specific C-type lectin
(2)
Western diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]
(2)
1a
d1muqa_
A:
1b
d1muqb_
B:
1c
d1muqc_
C:
1d
d1muqd_
D:
1e
d1muqe_
E:
[
close SCOP info
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1muqA00 (A:2-135)
1b: CATH_1muqB00 (B:2-135)
1c: CATH_1muqC00 (C:2-135)
1d: CATH_1muqD00 (D:2-135)
1e: CATH_1muqE00 (E:2-135)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Western diamondback rattlesnake (Crotalus atrox)
(2)
1a
1muqA00
A:2-135
1b
1muqB00
B:2-135
1c
1muqC00
C:2-135
1d
1muqD00
D:2-135
1e
1muqE00
E:2-135
[
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Lectin_C_1muqE01 (E:20-133)
1b: PFAM_Lectin_C_1muqE02 (E:20-133)
1c: PFAM_Lectin_C_1muqE03 (E:20-133)
1d: PFAM_Lectin_C_1muqE04 (E:20-133)
1e: PFAM_Lectin_C_1muqE05 (E:20-133)
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Clans
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(
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Organisms
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)
(
)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Crotalus atrox (Western diamondback rattlesnake)
(2)
1a
Lectin_C-1muqE01
E:20-133
1b
Lectin_C-1muqE02
E:20-133
1c
Lectin_C-1muqE03
E:20-133
1d
Lectin_C-1muqE04
E:20-133
1e
Lectin_C-1muqE05
E:20-133
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Asymmetric Unit 1
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Asym.Unit (129 KB)
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Header - Biol.Unit 1
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