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1MUJ
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE CLASS II MHC I-AB IN COMPLEX WITH A HUMAN CLIP PEPTIDE
Authors
:
Y. Zhu, I. A. Wilson
Date
:
23 Sep 02 (Deposition) - 18 Feb 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
I-Ab, Clip, Complex, Antigen, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhu, A. Y. Rudensky, A. L. Teyton, I. A. Wilson
Crystal Structure Of Mhc Class Ii I-Ab In Complex With A Human Clip Peptide: Prediction Of An I-Ab Peptide-Binding Motif
J. Mol. Biol. V. 326 1157 2003
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:118 , GLU A:166 , HOH A:576 , HOH A:597
BINDING SITE FOR RESIDUE NAG A 501
2
AC2
SOFTWARE
ASN B:19 , GLN B:22 , HOH B:545
BINDING SITE FOR RESIDUE NAG B 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:161-167,B:171-177)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
HA2B_MOUSE
188-194
1
A:161-167
HB2A_MOUSE
199-205
1
B:171-177
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Exons
(1, 1)
Info
All Exons
Exon 1.2c (C:87-101)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.2c
2: Boundary 1.2c/1.3a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000009530
1d
ENSE00002143935
chr5:
149792314-149792188
127
HG2A_HUMAN
1-42
42
0
-
-
1.2a
ENST00000009530
2a
ENSE00000767447
chr5:
149786887-149786715
173
HG2A_HUMAN
42-100
59
0
-
-
1.2c
ENST00000009530
2c
ENSE00000439662
chr5:
149786523-149786444
80
HG2A_HUMAN
100-126
27
1
C:87-101
15
1.3a
ENST00000009530
3a
ENSE00000767449
chr5:
149785884-149785822
63
HG2A_HUMAN
127-147
21
0
-
-
1.5
ENST00000009530
5
ENSE00000767450
chr5:
149784743-149784648
96
HG2A_HUMAN
148-179
32
0
-
-
1.6a
ENST00000009530
6a
ENSE00000841201
chr5:
149784330-149784243
88
HG2A_HUMAN
180-209
30
0
-
-
1.7
ENST00000009530
7
ENSE00000767452
chr5:
149782875-149782684
192
HG2A_HUMAN
209-273
65
0
-
-
1.8a
ENST00000009530
8a
ENSE00001673543
chr5:
149782188-149782126
63
HG2A_HUMAN
273-294
22
0
-
-
1.8d
ENST00000009530
8d
ENSE00002129676
chr5:
149781813-149781715
99
HG2A_HUMAN
294-296
3
0
-
-
[
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SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1muja1 (A:84-183)
2a: SCOP_d1mujb1 (B:94-192)
3a: SCOP_d1muja2 (A:0-83)
4a: SCOP_d1mujb2 (B:3-93)
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)
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Folds
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Class II MHC alpha chain, C-terminal domain
(75)
Mouse (Mus musculus), I-A group [TaxId: 10090]
(24)
1a
d1muja1
A:84-183
Protein domain
:
Class II MHC beta chain, C-terminal domain
(70)
Mouse (Mus musculus), I-A group [TaxId: 10090]
(16)
2a
d1mujb1
B:94-192
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class II MHC alpha chain, N-terminal domain
(75)
Mouse (Mus musculus), I-AB [TaxId: 10090]
(4)
3a
d1muja2
A:0-83
Protein domain
:
Class II MHC beta chain, N-terminal domain
(70)
Mouse (Mus musculus), I-AB [TaxId: 10090]
(5)
4a
d1mujb2
B:3-93
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1mujB01 (B:3-94)
1b: CATH_1mujA01 (A:3-81)
2a: CATH_1mujA02 (A:82-181)
2b: CATH_1mujB02 (B:95-192)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Homologous Superfamily
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
House mouse (Mus musculus)
(25)
1a
1mujB01
B:3-94
1b
1mujA01
A:3-81
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1mujA02
A:82-181
2b
1mujB02
B:95-192
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Pfam Domains
(4, 5)
Info
all PFAM domains
1a: PFAM_C1_set_1mujA01 (A:93-175)
1b: PFAM_C1_set_1mujB01 (B:103-185)
2a: PFAM_MHC_II_alpha_1mujA02 (A:4-84)
3a: PFAM_MHC_II_beta_1mujB02 (B:13-86)
4a: PFAM_MHC2_interact_1mujC01 (C:87-101)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Mus musculus (Mouse)
(118)
1a
C1-set-1mujA01
A:93-175
1b
C1-set-1mujB01
B:103-185
Clan
:
MHC
(252)
Family
:
MHC_II_alpha
(42)
Mus musculus (Mouse)
(16)
2a
MHC_II_alpha-1mujA02
A:4-84
Family
:
MHC_II_beta
(39)
Mus musculus (Mouse)
(14)
3a
MHC_II_beta-1mujB02
B:13-86
Clan
:
no clan defined [family: MHC2-interact]
(4)
Family
:
MHC2-interact
(4)
Homo sapiens (Human)
(4)
4a
MHC2-interact-1mujC01
C:87-101
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Asymmetric Unit 1
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