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1MU2
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (168 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-2 REVERSE TRANSCRIPTASE
Authors
:
J. Ren, L. E. Bird, P. P. Chamberlain, G. B. Stewart-Jones, D. I. Stuart, D. K. Stammers
Date
:
23 Sep 02 (Deposition) - 30 Oct 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hiv-2 Reverse Transcriptase, Aids, Polymerase, Drug Design, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ren, L. E. Bird, P. P. Chamberlain, G. B. Stewart-Jones, D. I. Stuart D. K. Stammers
Structure Of Hiv-2 Reverse Transcriptase At 2. 35-A Resolution And The Mechanism Of Resistance To Non-Nucleosid Inhibitors
Proc. Natl. Acad. Sci. Usa V. 99 14410 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 27)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
SO4
22
Ligand/Ion
SULFATE ION
[
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:165 , GLU A:169 , ARG A:172 , LYS A:173 , LYS B:35 , GLU B:139 , LYS B:142
BINDING SITE FOR RESIDUE SO4 A 1300
02
AC2
SOFTWARE
PHE A:221 , GLN A:222 , LYS A:223 , ASP A:224
BINDING SITE FOR RESIDUE SO4 A 1301
03
AC3
SOFTWARE
HIS A:162 , GLN A:166 , THR B:296 , GLU B:297 , LEU B:298
BINDING SITE FOR RESIDUE SO4 A 1302
04
AC4
SOFTWARE
HIS A:538 , LYS A:539 , GLY A:540 , GLN A:545 , HIS A:549 , LYS B:43 , GLU B:44
BINDING SITE FOR RESIDUE SO4 A 1303
05
AC5
SOFTWARE
ARG A:125 , LYS A:147
BINDING SITE FOR RESIDUE SO4 A 1304
06
AC6
SOFTWARE
LYS A:275 , THR A:276 , LYS A:277 , HOH A:1277
BINDING SITE FOR RESIDUE SO4 A 1305
07
AC7
SOFTWARE
GLU A:324 , ARG A:384 , ILE A:385 , HOH A:1026
BINDING SITE FOR RESIDUE SO4 A 1306
08
AC8
SOFTWARE
ARG B:125
BINDING SITE FOR RESIDUE SO4 B 1307
09
AC9
SOFTWARE
LYS A:539 , LYS B:275 , THR B:276 , LYS B:277 , HOH B:1133
BINDING SITE FOR RESIDUE SO4 B 1308
10
BC1
SOFTWARE
GLY B:316 , HIS B:317 , TYR B:318 , TYR B:319 , TRP B:382
BINDING SITE FOR RESIDUE SO4 B 1309
11
BC2
SOFTWARE
LYS A:539 , ASN B:265 , GLN B:269
BINDING SITE FOR RESIDUE SO4 B 1310
12
BC3
SOFTWARE
ALA A:174 , ASN A:175 , GLN A:204 , PRO B:272 , ILE B:309 , GLU B:313
BINDING SITE FOR RESIDUE SO4 A 1311
13
BC4
SOFTWARE
HIS A:278 , ARG A:281 , THR A:296 , LEU A:298 , HOH A:1111
BINDING SITE FOR RESIDUE SO4 A 1312
14
BC5
SOFTWARE
ARG A:394 , ASP A:414 , PHE A:415 , HOH A:1117 , HOH A:1232
BINDING SITE FOR RESIDUE SO4 A 1313
15
BC6
SOFTWARE
ASN B:362 , ARG B:365 , TYR B:404
BINDING SITE FOR RESIDUE SO4 B 1314
16
BC7
SOFTWARE
ARG A:460 , HOH A:1121
BINDING SITE FOR RESIDUE SO4 A 1315
17
BC8
SOFTWARE
SER A:498 , GLN A:499 , TYR A:500 , HOH A:1125
BINDING SITE FOR RESIDUE SO4 A 1316
18
BC9
SOFTWARE
LYS B:20 , LEU B:21 , ARG B:22
BINDING SITE FOR RESIDUE SO4 B 1317
19
CC1
SOFTWARE
THR A:296 , GLU A:297 , HIS B:162 , GLN B:166
BINDING SITE FOR RESIDUE SO4 A 1318
20
CC2
SOFTWARE
LYS A:249 , TRP A:252 , GLU A:300 , ARG A:307 , GLN B:161 , ARG B:165
BINDING SITE FOR RESIDUE SO4 A 1319
21
CC3
SOFTWARE
VAL B:416 , SER B:417
BINDING SITE FOR RESIDUE SO4 B 1320
22
CC4
SOFTWARE
LYS A:82 , SER A:284 , GLY A:285
BINDING SITE FOR RESIDUE SO4 A 1321
23
CC5
SOFTWARE
GLY A:99 , LEU A:100 , ALA A:101 , ILE A:179 , HOH A:1176 , ASN B:136 , ALA B:138
BINDING SITE FOR RESIDUE GOL A 1400
24
CC6
SOFTWARE
ILE B:75 , PHE B:77 , ASN B:81 , GLY B:152 , MET B:184 , ILE B:410
BINDING SITE FOR RESIDUE GOL B 1401
25
CC7
SOFTWARE
LEU B:270 , TYR B:271 , PRO B:272 , GLU B:313 , TYR B:318 , LYS B:346 , ILE B:347
BINDING SITE FOR RESIDUE GOL B 1402
26
CC8
SOFTWARE
LYS A:376 , GLN B:23 , TRP B:24 , PRO B:25
BINDING SITE FOR RESIDUE GOL B 1403
27
CC9
SOFTWARE
LYS A:173 , LYS A:176 , GLY B:273 , LYS B:275 , HOH B:1055
BINDING SITE FOR RESIDUE GOL B 1404
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (A:44-234,B:44-234)
2: RNASE_H (A:433-555)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV2RO
656-846
2
A:44-234
B:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV2RO
1045-1168
1
A:433-555
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1mu2a1 (A:430-555)
2a: SCOP_d1mu2a2 (A:3-429)
2b: SCOP_d1mu2b_ (B:)
View:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 2 [TaxId: 11709]
(1)
1a
d1mu2a1
A:430-555
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 2 [TaxId: 11709]
(1)
2a
d1mu2a2
A:3-429
2b
d1mu2b_
B:
[
close SCOP info
]
CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1mu2A02 (A:91-115,A:157-225)
1b: CATH_1mu2B02 (B:91-115,B:157-233)
1c: CATH_1mu2A03 (A:226-319)
1d: CATH_1mu2B03 (B:234-319)
1e: CATH_1mu2A04 (A:320-425)
1f: CATH_1mu2B04 (B:320-425)
2a: CATH_1mu2A05 (A:426-552)
3a: CATH_1mu2B01 (B:6-90,B:116-156)
3b: CATH_1mu2A01 (A:3-90,A:116-156)
View:
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Classes
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)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
Human immunodeficiency virus 2. Organism_taxid: 11709. Strain: prod.
(1)
1a
1mu2A02
A:91-115,A:157-225
1b
1mu2B02
B:91-115,B:157-233
1c
1mu2A03
A:226-319
1d
1mu2B03
B:234-319
1e
1mu2A04
A:320-425
1f
1mu2B04
B:320-425
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
Human immunodeficiency virus 2. Organism_taxid: 11709. Strain: prod.
(1)
2a
1mu2A05
A:426-552
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
Human immunodeficiency virus 2. Organism_taxid: 11709. Strain: prod.
(1)
3a
1mu2B01
B:6-90,B:116-156
3b
1mu2A01
A:3-90,A:116-156
[
close CATH info
]
Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_RNase_H_1mu2A01 (A:434-555)
2a: PFAM_RVT_1_1mu2B01 (B:63-234)
2b: PFAM_RVT_1_1mu2B02 (B:63-234)
3a: PFAM_RVT_connect_1mu2B03 (B:317-418)
3b: PFAM_RVT_connect_1mu2B04 (B:317-418)
4a: PFAM_RVT_thumb_1mu2B05 (B:238-307)
4b: PFAM_RVT_thumb_1mu2B06 (B:238-307)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
RNase_H
(288)
Family
:
RNase_H
(128)
Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
(1)
1a
RNase_H-1mu2A01
A:434-555
Clan
:
RdRP
(210)
Family
:
RVT_1
(95)
Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
(1)
2a
RVT_1-1mu2B01
B:63-234
2b
RVT_1-1mu2B02
B:63-234
Clan
:
no clan defined [family: RVT_connect]
(84)
Family
:
RVT_connect
(84)
Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
(1)
3a
RVT_connect-1mu2B03
B:317-418
3b
RVT_connect-1mu2B04
B:317-418
Clan
:
no clan defined [family: RVT_thumb]
(84)
Family
:
RVT_thumb
(84)
Human immunodeficiency virus type 2 subtype A (isolate ROD) (HIV-2)
(1)
4a
RVT_thumb-1mu2B05
B:238-307
4b
RVT_thumb-1mu2B06
B:238-307
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Asym.Unit (174 KB)
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