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1MTY
Asym. Unit
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Asym.Unit (487 KB)
Biol.Unit 1 (482 KB)
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(1)
Title
:
METHANE MONOOXYGENASE HYDROXYLASE FROM METHYLOCOCCUS CAPSULATUS (BATH)
Authors
:
A. C. Rosenzweig, P. Nordlund, S. J. Lippard, C. A. Frederick
Date
:
10 Jul 96 (Deposition) - 21 Apr 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : B,C,D,E,G,H
Biol. Unit 1: B,C,D,E,G,H (1x)
Keywords
:
Methane Monooxygenase, Hydroxylase, Dinuclear Iron Center Monooxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Rosenzweig, H. Brandstetter, D. A. Whittington, P. Nordlund, S. J. Lippard, C. A. Frederick
Crystal Structures Of The Methane Monooxygenase Hydroxylase From Methylococcus Capsulatus (Bath): Implications For Substrate Gating And Component Interactions.
Proteins V. 29 141 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
View:
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No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: FE1 (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
FE D:4 , GLN D:140 , GLU D:144 , GLU D:209 , GLU D:243 , HIS D:246 , HOH D:639 , HOH D:641
BINDING SITE FOR RESIDUE FE D 3
2
AC2
SOFTWARE
FE D:3 , GLU D:114 , GLU D:144 , HIS D:147 , HOH D:639 , HOH D:640 , HOH D:641
BINDING SITE FOR RESIDUE FE D 4
3
AC3
SOFTWARE
FE E:2 , GLN E:140 , GLU E:144 , GLU E:209 , GLU E:243 , HIS E:246 , HOH E:584 , HOH E:586
BINDING SITE FOR RESIDUE FE E 1
4
AC4
SOFTWARE
FE E:1 , GLU E:114 , GLU E:144 , HIS E:147 , HOH E:584 , HOH E:585 , HOH E:586
BINDING SITE FOR RESIDUE FE E 2
5
FE1
UNKNOWN
HIS D:147 , HIS E:147 , GLU D:114 , GLU E:114 , GLU D:144 , GLU E:144 , GLU D:209 , GLU E:209 , GLU D:243 , GLU E:243 , HIS D:246 , HIS E:246
FE BINDING SITE.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1mtyd_ (D:)
1b: SCOP_d1mtye_ (E:)
2a: SCOP_d1mtyb_ (B:)
2b: SCOP_d1mtyc_ (C:)
3a: SCOP_d1mtyg_ (G:)
3b: SCOP_d1mtyh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Methane monooxygenase hydrolase alpha subunit
(28)
Methylococcus capsulatus [TaxId: 414]
(26)
1a
d1mtyd_
D:
1b
d1mtye_
E:
Protein domain
:
Methane monooxygenase hydrolase beta subunit
(29)
Methylococcus capsulatus [TaxId: 414]
(27)
2a
d1mtyb_
B:
2b
d1mtyc_
C:
Fold
:
Open three-helical up-and-down bundle
(49)
Superfamily
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Family
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Protein domain
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Methylococcus capsulatus [TaxId: 414]
(27)
3a
d1mtyg_
G:
3b
d1mtyh_
H:
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1mtyB00 (B:6-389)
1b: CATH_1mtyC00 (C:6-389)
1c: CATH_1mtyD00 (D:15-526)
1d: CATH_1mtyE00 (E:15-526)
2a: CATH_1mtyG01 (G:4-71)
2b: CATH_1mtyH01 (H:4-71)
3a: CATH_1mtyG02 (G:72-144)
3b: CATH_1mtyH02 (H:72-144)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Bath (Methylococcus capsulatus str)
(4)
1a
1mtyB00
B:6-389
1b
1mtyC00
C:6-389
1c
1mtyD00
D:15-526
1d
1mtyE00
E:15-526
Architecture
:
Up-down Bundle
(3216)
Topology
:
Monooxygenase
(39)
Homologous Superfamily
:
[code=1.20.1280.10, no name defined]
(28)
Bath (Methylococcus capsulatus str)
(4)
2a
1mtyG01
G:4-71
2b
1mtyH01
H:4-71
Homologous Superfamily
:
[code=1.20.1280.30, no name defined]
(28)
Bath (Methylococcus capsulatus str)
(4)
3a
1mtyG02
G:72-144
3b
1mtyH02
H:72-144
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Phenol_Hydrox_1mtyE01 (E:36-263)
1b: PFAM_Phenol_Hydrox_1mtyE02 (E:36-263)
1c: PFAM_Phenol_Hydrox_1mtyC01 (C:71-308)
1d: PFAM_Phenol_Hydrox_1mtyC02 (C:71-308)
2a: PFAM_MeMO_Hyd_G_1mtyH01 (H:6-164)
2b: PFAM_MeMO_Hyd_G_1mtyH02 (H:6-164)
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)
Clan
:
Ferritin
(185)
Family
:
Phenol_Hydrox
(21)
Methylococcus capsulatus
(11)
1a
Phenol_Hydrox-1mtyE01
E:36-263
1b
Phenol_Hydrox-1mtyE02
E:36-263
1c
Phenol_Hydrox-1mtyC01
C:71-308
1d
Phenol_Hydrox-1mtyC02
C:71-308
Clan
:
no clan defined [family: MeMO_Hyd_G]
(13)
Family
:
MeMO_Hyd_G
(13)
Methylococcus capsulatus
(11)
2a
MeMO_Hyd_G-1mtyH01
H:6-164
2b
MeMO_Hyd_G-1mtyH02
H:6-164
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