PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1MT5
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (174 KB)
Biol.Unit 2 (175 KB)
Biol.Unit 3 (175 KB)
Biol.Unit 4 (175 KB)
Biol.Unit 5 (174 KB)
Biol.Unit 6 (175 KB)
Biol.Unit 7 (175 KB)
Biol.Unit 8 (173 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF FATTY ACID AMIDE HYDROLASE
Authors
:
M. H. Bracey, M. A. Hanson, K. R. Masuda, R. C. Stevens, B. F. Cravatt
Date
:
20 Sep 02 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Amidase Signature, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Bracey, M. A. Hanson, K. R. Masuda, R. C. Stevens, B. F. Cravatt
Structural Adaptations In A Membrane Enzyme That Terminates Endocannabinoid Signaling
Science V. 298 1793 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 16)
Info
All Hetero Components
1a: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYa)
1b: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYb)
1c: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYc)
1d: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYd)
1e: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYe)
1f: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYf)
1g: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYg)
1h: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYh)
1i: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYi)
1j: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYj)
1k: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYk)
1l: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYl)
1m: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYm)
1n: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYn)
1o: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYo)
1p: METHYL ARACHIDONYL FLUOROPHOSPHONA... (MAYp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MAY
16
Ligand/Ion
METHYL ARACHIDONYL FLUOROPHOSPHONATE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:191 , SER A:193 , SER A:217 , ASP A:237 , ILE A:238 , GLY A:239 , GLY A:240 , SER A:241 , TYR A:335 , LEU A:372 , ALA A:377 , PHE A:381 , ARG A:428 , ILE A:491 , VAL A:495
BINDING SITE FOR RESIDUE MAY A 600
02
AC2
SOFTWARE
MET B:191 , LEU B:192 , SER B:193 , SER B:217 , ASP B:237 , ILE B:238 , GLY B:239 , GLY B:240 , SER B:241 , TYR B:335 , LEU B:372 , ALA B:377 , PHE B:381 , ILE B:491
BINDING SITE FOR RESIDUE MAY B 600
03
AC3
SOFTWARE
MET C:191 , LEU C:192 , SER C:193 , PHE C:194 , SER C:217 , ASP C:237 , ILE C:238 , GLY C:239 , GLY C:240 , SER C:241 , TYR C:335 , LEU C:372 , ALA C:377 , LEU C:380 , PHE C:381 , ILE C:491 , VAL C:495
BINDING SITE FOR RESIDUE MAY C 600
04
AC4
SOFTWARE
MET D:191 , SER D:193 , SER D:217 , ASP D:237 , ILE D:238 , GLY D:239 , GLY D:240 , SER D:241 , TYR D:335 , LEU D:372 , ALA D:377 , LEU D:380 , PHE D:381 , PHE D:432 , ILE D:491 , VAL D:495
BINDING SITE FOR RESIDUE MAY D 600
05
AC5
SOFTWARE
MET E:191 , LEU E:192 , SER E:193 , SER E:217 , ASP E:237 , ILE E:238 , GLY E:239 , GLY E:240 , SER E:241 , TYR E:335 , LEU E:372 , ALA E:377 , LEU E:380 , PHE E:381 , ILE E:491 , VAL E:495
BINDING SITE FOR RESIDUE MAY E 600
06
AC6
SOFTWARE
MET F:191 , SER F:193 , SER F:217 , ASP F:237 , ILE F:238 , GLY F:239 , GLY F:240 , SER F:241 , TYR F:335 , LEU F:372 , ALA F:377 , LEU F:380 , PHE F:381 , ILE F:491 , VAL F:495
BINDING SITE FOR RESIDUE MAY F 600
07
AC7
SOFTWARE
MET G:191 , SER G:193 , PHE G:194 , SER G:217 , ASP G:237 , ILE G:238 , GLY G:239 , GLY G:240 , SER G:241 , TYR G:335 , LEU G:372 , PHE G:381 , ILE G:491 , VAL G:495
BINDING SITE FOR RESIDUE MAY G 600
08
AC8
SOFTWARE
MET H:191 , SER H:193 , SER H:217 , ASP H:237 , ILE H:238 , GLY H:239 , GLY H:240 , SER H:241 , TYR H:335 , LEU H:372 , ALA H:377 , LEU H:380 , PHE H:381 , ILE H:491 , VAL H:495
BINDING SITE FOR RESIDUE MAY H 600
09
AC9
SOFTWARE
MET I:191 , SER I:193 , PHE I:194 , SER I:217 , ASP I:237 , ILE I:238 , GLY I:239 , SER I:241 , TYR I:335 , LEU I:372 , ALA I:377 , LEU I:380 , PHE I:381 , ILE I:491 , VAL I:495
BINDING SITE FOR RESIDUE MAY I 600
10
BC1
SOFTWARE
MET J:191 , SER J:193 , PHE J:194 , SER J:217 , ASP J:237 , ILE J:238 , GLY J:239 , GLY J:240 , SER J:241 , TYR J:335 , LEU J:372 , ALA J:377 , LEU J:380 , PHE J:381 , ILE J:491 , TRP J:531
BINDING SITE FOR RESIDUE MAY J 600
11
BC2
SOFTWARE
MET K:191 , LEU K:192 , SER K:193 , SER K:217 , ASP K:237 , ILE K:238 , GLY K:239 , GLY K:240 , SER K:241 , TYR K:335 , LEU K:372 , ALA K:377 , LEU K:380 , PHE K:381 , ILE K:491 , VAL K:495
BINDING SITE FOR RESIDUE MAY K 600
12
BC3
SOFTWARE
MET L:191 , LEU L:192 , SER L:193 , PHE L:194 , SER L:217 , ASP L:237 , ILE L:238 , GLY L:239 , SER L:241 , TYR L:335 , LEU L:372 , PHE L:381 , ARG L:428 , ILE L:491 , VAL L:495 , TRP L:531
BINDING SITE FOR RESIDUE MAY L 600
13
BC4
SOFTWARE
MET M:191 , LEU M:192 , SER M:193 , SER M:217 , THR M:236 , ASP M:237 , ILE M:238 , GLY M:239 , GLY M:240 , SER M:241 , TYR M:335 , LEU M:372 , PHE M:381 , LEU M:404 , PHE M:432 , THR M:488 , ILE M:491 , VAL M:495
BINDING SITE FOR RESIDUE MAY M 600
14
BC5
SOFTWARE
MET N:191 , LEU N:192 , SER N:193 , PHE N:194 , SER N:217 , ASP N:237 , ILE N:238 , GLY N:239 , GLY N:240 , SER N:241 , TYR N:335 , LEU N:372 , ALA N:377 , PHE N:381 , PHE N:432 , ILE N:491
BINDING SITE FOR RESIDUE MAY N 600
15
BC6
SOFTWARE
MET O:191 , LEU O:192 , SER O:193 , SER O:217 , ASP O:237 , ILE O:238 , GLY O:239 , GLY O:240 , SER O:241 , TYR O:335 , LEU O:372 , ALA O:377 , PHE O:381 , ILE O:491 , VAL O:495 , TRP O:531
BINDING SITE FOR RESIDUE MAY O 600
16
BC7
SOFTWARE
MET P:191 , LEU P:192 , SER P:193 , SER P:217 , ASP P:237 , ILE P:238 , GLY P:239 , GLY P:240 , SER P:241 , TYR P:335 , LEU P:372 , LEU P:380 , PHE P:381 , ARG P:428 , ILE P:491 , TRP P:531
BINDING SITE FOR RESIDUE MAY P 600
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: AMIDASES (A:215-246,B:215-246,C:215-246,D:21...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMIDASES
PS00571
Amidases signature.
FAAH1_RAT
215-246
16
A:215-246
B:215-246
C:215-246
D:215-246
E:215-246
F:215-246
G:215-246
H:215-246
I:215-246
J:215-246
K:215-246
L:215-246
M:215-246
N:215-246
O:215-246
P:215-246
[
close PROSITE info
]
Exons
(15, 240)
Info
All Exons
Exon 1.1a (A:37-65 | B:37-65 | C:37-65 | D:37...)
Exon 1.2 (A:66-103 | B:66-103 | C:66-103 | D...)
Exon 1.3 (A:104-148 | B:104-148 | C:104-148 ...)
Exon 1.4 (A:149-193 | B:149-193 | C:149-193 ...)
Exon 1.5 (A:193-262 | B:193-262 | C:193-262 ...)
Exon 1.6 (A:262-276 | B:262-276 | C:262-276 ...)
Exon 1.7 (A:276-317 | B:276-317 | C:276-317 ...)
Exon 1.8 (A:318-359 | B:318-359 | C:318-359 ...)
Exon 1.9 (A:360-392 | B:360-392 | C:360-392 ...)
Exon 1.10 (A:392-425 | B:392-425 | C:392-425 ...)
Exon 1.11 (A:426-439 | B:426-439 | C:426-439 ...)
Exon 1.12a (A:439-452 | B:439-452 | C:439-452 ...)
Exon 1.15b (A:453-489 | B:453-489 | C:453-489 ...)
Exon 1.16a (A:489-537 | B:489-537 | C:489-537 ...)
Exon 1.17 (A:538-573 | B:538-573 | C:538-573 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12a
13: Boundary 1.12a/1.15b
14: Boundary 1.15b/1.16a
15: Boundary 1.16a/1.17
16: Boundary 1.17/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSRNOT00000015961
1a
ENSRNOE00000225920
chr5:
136310965-136311220
256
FAAH1_RAT
1-65
65
16
A:37-65
B:37-65
C:37-65
D:37-65
E:37-65
F:37-65
G:37-65
H:37-65
I:37-65
J:37-65
K:37-65
L:37-65
M:37-65
N:37-65
O:37-65
P:37-65
29
29
29
29
29
29
29
29
29
29
29
29
29
29
29
29
1.2
ENSRNOT00000015961
2
ENSRNOE00000103673
chr5:
136318583-136318696
114
FAAH1_RAT
66-103
38
16
A:66-103
B:66-103
C:66-103
D:66-103
E:66-103
F:66-103
G:66-103
H:66-103
I:66-103
J:66-103
K:66-103
L:66-103
M:66-103
N:66-103
O:66-103
P:66-103
38
38
38
38
38
38
38
38
38
38
38
38
38
38
38
38
1.3
ENSRNOT00000015961
3
ENSRNOE00000103796
chr5:
136321039-136321173
135
FAAH1_RAT
104-148
45
16
A:104-148
B:104-148
C:104-148
D:104-148
E:104-148
F:104-148
G:104-148
H:104-148
I:104-148
J:104-148
K:104-148
L:104-148
M:104-148
N:104-148
O:104-148
P:104-148
45
45
45
45
45
45
45
45
45
45
45
45
45
45
45
45
1.4
ENSRNOT00000015961
4
ENSRNOE00000103928
chr5:
136321369-136321502
134
FAAH1_RAT
149-193
45
16
A:149-193
B:149-193
C:149-193
D:149-193
E:149-193
F:149-193
G:149-193
H:149-193
I:149-193
J:149-193
K:149-193
L:149-193
M:149-193
N:149-193
O:149-193
P:149-193
45
45
45
45
45
45
45
45
45
45
45
45
45
45
45
45
1.5
ENSRNOT00000015961
5
ENSRNOE00000104062
chr5:
136321598-136321804
207
FAAH1_RAT
193-262
70
16
A:193-262
B:193-262
C:193-262
D:193-262
E:193-262
F:193-262
G:193-262
H:193-262
I:193-262
J:193-262
K:193-262
L:193-262
M:193-262
N:193-262
O:193-262
P:193-262
70
70
70
70
70
70
70
70
70
70
70
70
70
70
70
70
1.6
ENSRNOT00000015961
6
ENSRNOE00000104198
chr5:
136322049-136322089
41
FAAH1_RAT
262-276
15
16
A:262-276
B:262-276
C:262-276
D:262-276
E:262-276
F:262-276
G:262-276
H:262-276
I:262-276
J:262-276
K:262-276
L:262-276
M:262-276
N:262-276
O:262-276
P:262-276
15
15
15
15
15
15
15
15
15
15
15
15
15
15
15
15
1.7
ENSRNOT00000015961
7
ENSRNOE00000111834
chr5:
136322314-136322438
125
FAAH1_RAT
276-317
42
16
A:276-317
B:276-317
C:276-317
D:276-317
E:276-317
F:276-317
G:276-317
H:276-317
I:276-317
J:276-317
K:276-317
L:276-317
M:276-317
N:276-317
O:276-317
P:276-317
42
42
42
42
42
42
42
42
42
42
42
42
42
42
42
42
1.8
ENSRNOT00000015961
8
ENSRNOE00000104455
chr5:
136323598-136323723
126
FAAH1_RAT
318-359
42
16
A:318-359
B:318-359
C:318-359
D:318-359
E:318-359
F:318-359
G:318-359
H:318-359
I:318-359
J:318-359
K:318-359
L:318-359
M:318-359
N:318-359
O:318-359
P:318-359
42
42
42
42
42
42
42
42
42
42
42
42
42
42
42
42
1.9
ENSRNOT00000015961
9
ENSRNOE00000112023
chr5:
136324170-136324267
98
FAAH1_RAT
360-392
33
16
A:360-392
B:360-392
C:360-392
D:360-392
E:360-392
F:360-392
G:360-392
H:360-392
I:360-392
J:360-392
K:360-392
L:360-392
M:360-392
N:360-392
O:360-392
P:360-392
33
33
33
33
33
33
33
33
33
33
33
33
33
33
33
33
1.10
ENSRNOT00000015961
10
ENSRNOE00000105978
chr5:
136325413-136325512
100
FAAH1_RAT
392-425
34
16
A:392-425
B:392-425
C:392-425
D:392-425
E:392-425
F:392-425
G:392-425
H:392-425
I:392-425
J:392-425
K:392-425
L:392-425
M:392-425
N:392-425
O:392-425
P:392-425
34
34
34
34
34
34
34
34
34
34
34
34
34
34
34
34
1.11
ENSRNOT00000015961
11
ENSRNOE00000106118
chr5:
136325776-136325816
41
FAAH1_RAT
426-439
14
16
A:426-439
B:426-439
C:426-439
D:426-439
E:426-439
F:426-439
G:426-439
H:426-439
I:426-439
J:426-439
K:426-439
L:426-439
M:426-439
N:426-439
O:426-439
P:426-439
14
14
14
14
14
14
14
14
14
14
14
14
14
14
14
14
1.12a
ENSRNOT00000015961
12a
ENSRNOE00000318212
chr5:
136326509-136326548
40
FAAH1_RAT
439-452
14
16
A:439-452
B:439-452
C:439-452
D:439-452
E:439-452
F:439-452
G:439-452
H:439-452
I:439-452
J:439-452
K:439-452
L:439-452
M:439-452
N:439-452
O:439-452
P:439-452
14
14
14
14
14
14
14
14
14
14
14
14
14
14
14
14
1.15b
ENSRNOT00000015961
15b
ENSRNOE00000225847
chr5:
136326988-136327096
109
FAAH1_RAT
453-489
37
16
A:453-489
B:453-489
C:453-489
D:453-489
E:453-489
F:453-489
G:453-489
H:453-489
I:453-489
J:453-489
K:453-489
L:453-489
M:453-489
N:453-489
O:453-489
P:453-489
37
37
37
37
37
37
37
37
37
37
37
37
37
37
37
37
1.16a
ENSRNOT00000015961
16a
ENSRNOE00000110963
chr5:
136327622-136327767
146
FAAH1_RAT
489-537
49
16
A:489-537
B:489-537
C:489-537
D:489-537
E:489-537
F:489-537
G:489-537
H:489-537
I:489-537
J:489-537
K:489-537
L:489-537
M:489-537
N:489-537
O:489-537
P:489-537
49
49
49
49
49
49
49
49
49
49
49
49
49
49
49
49
1.17
ENSRNOT00000015961
17
ENSRNOE00000112221
chr5:
136327964-136329817
1854
FAAH1_RAT
538-579
42
16
A:538-573
B:538-573
C:538-573
D:538-573
E:538-573
F:538-573
G:538-573
H:538-573
I:538-573
J:538-573
K:538-573
L:538-573
M:538-573
N:538-573
O:538-573
P:538-573
36
36
36
36
36
36
36
36
36
36
36
36
36
36
36
36
[
close EXON info
]
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1mt5a_ (A:)
1b: SCOP_d1mt5b_ (B:)
1c: SCOP_d1mt5k_ (K:)
1d: SCOP_d1mt5l_ (L:)
1e: SCOP_d1mt5m_ (M:)
1f: SCOP_d1mt5n_ (N:)
1g: SCOP_d1mt5o_ (O:)
1h: SCOP_d1mt5p_ (P:)
1i: SCOP_d1mt5c_ (C:)
1j: SCOP_d1mt5d_ (D:)
1k: SCOP_d1mt5e_ (E:)
1l: SCOP_d1mt5f_ (F:)
1m: SCOP_d1mt5g_ (G:)
1n: SCOP_d1mt5h_ (H:)
1o: SCOP_d1mt5i_ (I:)
1p: SCOP_d1mt5j_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Amidase signature (AS) enzymes
(41)
Superfamily
:
Amidase signature (AS) enzymes
(41)
Family
:
Amidase signature (AS) enzymes
(41)
Protein domain
:
Fatty acid amide hydrolase (oleamide hydrolase)
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1mt5a_
A:
1b
d1mt5b_
B:
1c
d1mt5k_
K:
1d
d1mt5l_
L:
1e
d1mt5m_
M:
1f
d1mt5n_
N:
1g
d1mt5o_
O:
1h
d1mt5p_
P:
1i
d1mt5c_
C:
1j
d1mt5d_
D:
1k
d1mt5e_
E:
1l
d1mt5f_
F:
1m
d1mt5g_
G:
1n
d1mt5h_
H:
1o
d1mt5i_
I:
1p
d1mt5j_
J:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1mt5A00 (A:37-573)
1b: CATH_1mt5B00 (B:37-573)
1c: CATH_1mt5K00 (K:37-573)
1d: CATH_1mt5L00 (L:37-573)
1e: CATH_1mt5M00 (M:37-573)
1f: CATH_1mt5N00 (N:37-573)
1g: CATH_1mt5O00 (O:37-573)
1h: CATH_1mt5P00 (P:37-573)
1i: CATH_1mt5C00 (C:37-573)
1j: CATH_1mt5D00 (D:37-573)
1k: CATH_1mt5E00 (E:37-573)
1l: CATH_1mt5F00 (F:37-573)
1m: CATH_1mt5G00 (G:37-573)
1n: CATH_1mt5H00 (H:37-573)
1o: CATH_1mt5I00 (I:37-573)
1p: CATH_1mt5J00 (J:37-573)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Amidase signature (AS) enzymes
(22)
Homologous Superfamily
:
Amidase signature (AS) enzymes
(22)
Norway rat (Rattus norvegicus)
(1)
1a
1mt5A00
A:37-573
1b
1mt5B00
B:37-573
1c
1mt5K00
K:37-573
1d
1mt5L00
L:37-573
1e
1mt5M00
M:37-573
1f
1mt5N00
N:37-573
1g
1mt5O00
O:37-573
1h
1mt5P00
P:37-573
1i
1mt5C00
C:37-573
1j
1mt5D00
D:37-573
1k
1mt5E00
E:37-573
1l
1mt5F00
F:37-573
1m
1mt5G00
G:37-573
1n
1mt5H00
H:37-573
1o
1mt5I00
I:37-573
1p
1mt5J00
J:37-573
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Amidase_1mt5P01 (P:95-562)
1b: PFAM_Amidase_1mt5P02 (P:95-562)
1c: PFAM_Amidase_1mt5P03 (P:95-562)
1d: PFAM_Amidase_1mt5P04 (P:95-562)
1e: PFAM_Amidase_1mt5P05 (P:95-562)
1f: PFAM_Amidase_1mt5P06 (P:95-562)
1g: PFAM_Amidase_1mt5P07 (P:95-562)
1h: PFAM_Amidase_1mt5P08 (P:95-562)
1i: PFAM_Amidase_1mt5P09 (P:95-562)
1j: PFAM_Amidase_1mt5P10 (P:95-562)
1k: PFAM_Amidase_1mt5P11 (P:95-562)
1l: PFAM_Amidase_1mt5P12 (P:95-562)
1m: PFAM_Amidase_1mt5P13 (P:95-562)
1n: PFAM_Amidase_1mt5P14 (P:95-562)
1o: PFAM_Amidase_1mt5P15 (P:95-562)
1p: PFAM_Amidase_1mt5P16 (P:95-562)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Amidase]
(17)
Family
:
Amidase
(17)
Rattus norvegicus (Rat)
(15)
1a
Amidase-1mt5P01
P:95-562
1b
Amidase-1mt5P02
P:95-562
1c
Amidase-1mt5P03
P:95-562
1d
Amidase-1mt5P04
P:95-562
1e
Amidase-1mt5P05
P:95-562
1f
Amidase-1mt5P06
P:95-562
1g
Amidase-1mt5P07
P:95-562
1h
Amidase-1mt5P08
P:95-562
1i
Amidase-1mt5P09
P:95-562
1j
Amidase-1mt5P10
P:95-562
1k
Amidase-1mt5P11
P:95-562
1l
Amidase-1mt5P12
P:95-562
1m
Amidase-1mt5P13
P:95-562
1n
Amidase-1mt5P14
P:95-562
1o
Amidase-1mt5P15
P:95-562
1p
Amidase-1mt5P16
P:95-562
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.3 MB)
Header - Asym.Unit
Biol.Unit 1 (174 KB)
Header - Biol.Unit 1
Biol.Unit 2 (175 KB)
Header - Biol.Unit 2
Biol.Unit 3 (175 KB)
Header - Biol.Unit 3
Biol.Unit 4 (175 KB)
Header - Biol.Unit 4
Biol.Unit 5 (174 KB)
Header - Biol.Unit 5
Biol.Unit 6 (175 KB)
Header - Biol.Unit 6
Biol.Unit 7 (175 KB)
Header - Biol.Unit 7
Biol.Unit 8 (173 KB)
Header - Biol.Unit 8
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1MT5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help