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1MSX
Theor. Model
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Theoretical Model (129 KB)
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Models
(2 )
Title
:
HUMAN FACTOR XA COMPLEXED WITH 2-[3-(15N-AMINO-15N-IMINO-13C-METHYL)PHENOXY]-6-[3-(15N-AMINO-13C-METHYL)PHENOXY]-3, 5-DIFLUORO-4-METHYLPYRIDINE (ZK-806299), BINDING MODEL FROM DOUBLE REDOR NMR AND MD SIMULATIONS.
Authors
:
L. M. Mcdowell, M. A. Mccarrick, D. R. Studelska, R. D. O'Connor, D. R. Light, W. J. Guilford, J. L. Dallas, B. Poliks, J. Schaefer
Date
:
19 Sep 02 (Deposition) - 25 Feb 03 (Release) - 25 Feb 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(2 x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Protein Inhibitor Complex, Blood Coagulation Factor, Serine Protease Class, Redor, Nmr, Molecular Dynamics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Mcdowell, M. A. Mccarrick, D. R. Studelska, R. D. O'Connor, D. R. Light, W. J. Guilford, D. Arnaiz, M. Adler, J. L. Dallas, B. Poliks, J. Schaefer
Human Factor Xa Bound Amidine Inhibitor Conformation By Double Rotational-Echo Double Resonance Nuclear Magnetic Resonance And Molecular Dynamics Simulations.
J. Med. Chem. V. 46 359 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: [3-AMINOMETHYLPHENYL-OXY-]-[BENZAM... (ZK9a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZK9
1
Ligand/Ion
[3-AMINOMETHYLPHENYL-OXY-]-[BENZAMIDIN-3-YLOXY]-3,5-DIFLUORO-4-METHYL-PYRIDINE
[
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(18, 18)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_065437 (G69R, chain A, )
02: VAR_065438 (E84K, chain A, )
03: VAR_065439 (D102N, chain A, )
04: VAR_065440 (R107W, chain A, )
05: VAR_065441 (V118M, chain A, )
06: VAR_065442 (E129K, chain A, )
07: VAR_065443 (T135M, chain A, )
08: VAR_065444 (G140S, chain A, )
09: VAR_065445 (R143C, chain A, )
10: VAR_065446 (S152P, chain A, )
11: VAR_072751 (V160A, chain A, )
12: VAR_065447 (P161S, chain A, )
13: VAR_065448 (C168F, chain A, )
14: VAR_065449 (C182R, chain A, )
15: VAR_065450 (G184S, chain A, )
16: VAR_065451 (G196R, chain A, )
17: VAR_072752 (G197D, chain A, )
18: VAR_065452 (K224N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065437
G
289
R
FA10_HUMAN
Disease (FA10D)
---
A
G
69
R
02
UniProt
VAR_065438
E
304
K
FA10_HUMAN
Disease (FA10D)
---
A
E
84
K
03
UniProt
VAR_065439
D
322
N
FA10_HUMAN
Disease (FA10D)
---
A
D
102
N
04
UniProt
VAR_065440
R
327
W
FA10_HUMAN
Disease (FA10D)
---
A
R
107
W
05
UniProt
VAR_065441
V
338
M
FA10_HUMAN
Disease (FA10D)
---
A
V
118
M
06
UniProt
VAR_065442
E
350
K
FA10_HUMAN
Disease (FA10D)
---
A
E
129
K
07
UniProt
VAR_065443
T
358
M
FA10_HUMAN
Disease (FA10D)
---
A
T
135
M
08
UniProt
VAR_065444
G
363
S
FA10_HUMAN
Disease (FA10D)
---
A
G
140
S
09
UniProt
VAR_065445
R
366
C
FA10_HUMAN
Disease (FA10D)
---
A
R
143
C
10
UniProt
VAR_065446
S
374
P
FA10_HUMAN
Disease (FA10D)
---
A
S
152
P
11
UniProt
VAR_072751
V
382
A
FA10_HUMAN
Disease (FA10D)
---
A
V
160
A
12
UniProt
VAR_065447
P
383
S
FA10_HUMAN
Disease (FA10D)
---
A
P
161
S
13
UniProt
VAR_065448
C
390
F
FA10_HUMAN
Disease (FA10D)
199778916
A
C
168
F
14
UniProt
VAR_065449
C
404
R
FA10_HUMAN
Disease (FA10D)
---
A
C
182
R
15
UniProt
VAR_065450
G
406
S
FA10_HUMAN
Disease (FA10D)
---
A
G
184
S
16
UniProt
VAR_065451
G
420
R
FA10_HUMAN
Disease (FA10D)
---
A
G
196
R
17
UniProt
VAR_072752
G
421
D
FA10_HUMAN
Disease (FA10D)
---
A
G
197
D
18
UniProt
VAR_065452
K
448
N
FA10_HUMAN
Disease (FA10D)
---
A
K
224
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243)
2: TRYPSIN_HIS (A:53-58)
3: TRYPSIN_SER (A:189-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA10_HUMAN
235-467
1
A:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA10_HUMAN
272-277
1
A:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA10_HUMAN
413-424
1
A:189-200
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.7a (A:16-30)
Exon 1.8e (A:31-69)
Exon 1.9c (A:69-245 (gaps))
View:
Select:
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All Exon Boundaries
1: Boundary 1.6c/1.7a
2: Boundary 1.7a/1.8e
3: Boundary 1.8e/1.9c
4: Boundary 1.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000375559
1b
ENSE00001885902
chr13:
113777132-113777239
108
FA10_HUMAN
1-24
24
0
-
-
1.2
ENST00000375559
2
ENSE00001757906
chr13:
113783766-113783926
161
FA10_HUMAN
24-77
54
0
-
-
1.4
ENST00000375559
4
ENSE00001666002
chr13:
113792771-113792795
25
FA10_HUMAN
78-86
9
0
-
-
1.5
ENST00000375559
5
ENSE00001614193
chr13:
113793671-113793784
114
FA10_HUMAN
86-124
39
0
-
-
1.6c
ENST00000375559
6c
ENSE00000862532
chr13:
113795233-113795364
132
FA10_HUMAN
124-168
45
0
-
-
1.7a
ENST00000375559
7a
ENSE00001710199
chr13:
113798165-113798409
245
FA10_HUMAN
168-249
82
1
A:16-30
15
1.8e
ENST00000375559
8e
ENSE00000862534
chr13:
113801693-113801810
118
FA10_HUMAN
250-289
40
1
A:31-69
40
1.9c
ENST00000375559
9c
ENSE00001616173
chr13:
113803230-113803843
614
FA10_HUMAN
289-488
200
1
A:69-245 (gaps)
183
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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(currently selected atoms:
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Protein
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Chain A
Asymmetric Unit 1
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