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1MS7
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (103 KB)
Biol.Unit 3 (148 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE GLUR2 LIGAND-BINDING CORE (S1S2J) IN COMPLEX WITH (S)-DES-ME-AMPA AT 1.97 A RESOLUTION, CRYSTALLIZATION IN THE PRESENCE OF ZINC ACETATE
Authors
:
C. Kasper, M. -L. Lunn, T. Liljefors, E. Gouaux, J. Egebjerg, J. S. Kastrup
Date
:
19 Sep 02 (Deposition) - 08 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Biol. Unit 3: A,B,C (1x)
Keywords
:
Ionotropic Glutamate Receptor Glur2, Ligand-Binding Core, Agonist Complex, Membrane Protein
(Keyword Search:
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Reference
:
C. Kasper, M. -L. Lunn, T. Liljefors, E. Gouaux, J. Egebjerg, J. S. Kastrup
Glur2 Ligand-Binding Core Complexes: Importance Of The Isoxazolol Moiety And 5-Substituent For The Binding Mode Of Ampa-Type Agonists
Febs Lett. V. 531 173 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (S)-2-AMINO-3-(3-HYDROXY-ISOXAZOL-... (SHIa)
1b: (S)-2-AMINO-3-(3-HYDROXY-ISOXAZOL-... (SHIb)
1c: (S)-2-AMINO-3-(3-HYDROXY-ISOXAZOL-... (SHIc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
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No.
Name
Count
Type
Full Name
1
SHI
2
Ligand/Ion
(S)-2-AMINO-3-(3-HYDROXY-ISOXAZOL-4-YL)PROPIONIC ACID
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:20 , GLU A:21 , HIS B:20 , GLU B:27 , HOH B:3424
BINDING SITE FOR RESIDUE ZN B 3001
2
AC2
SOFTWARE
GLU A:39 , LYS A:42 , HIS A:43 , HOH A:3184 , HOH A:3223 , HOH A:3333
BINDING SITE FOR RESIDUE ZN A 3002
3
AC3
SOFTWARE
ASP A:62 , HOH A:3076 , HOH A:3326 , HIS C:20
BINDING SITE FOR RESIDUE ZN A 3003
4
AC4
SOFTWARE
GLU B:39 , HIS B:43 , LEU B:238 , GLN B:241 , HOH B:3453 , GLU C:163
BINDING SITE FOR RESIDUE ZN B 3004
5
AC6
SOFTWARE
GLU B:163 , ZN B:3005 , GLU C:39 , HIS C:43
BINDING SITE FOR RESIDUE ZN B 3006
6
AC7
SOFTWARE
TYR A:58 , PRO A:86 , THR A:88 , ARG A:93 , GLY A:138 , SER A:139 , THR A:140 , LEU A:189 , GLU A:190 , MET A:193 , TYR A:217 , HOH A:3006 , HOH A:3019 , HOH A:3070
BINDING SITE FOR RESIDUE SHI A 2001
7
AC9
SOFTWARE
TYR C:58 , PRO C:86 , THR C:88 , ARG C:93 , GLY C:138 , SER C:139 , THR C:140 , LEU C:189 , GLU C:190 , MET C:193 , TYR C:217 , HOH C:2042 , HOH C:2378 , HOH C:2384
BINDING SITE FOR RESIDUE SHI C 2003
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1ms7a_ (A:)
1b: SCOP_d1ms7b_ (B:)
1c: SCOP_d1ms7c_ (C:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d1ms7a_
A:
1b
d1ms7b_
B:
1c
d1ms7c_
C:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1ms7A02 (A:1-106,A:216-255)
1b: CATH_1ms7B02 (B:1-106,B:216-255)
1c: CATH_1ms7C02 (C:1-106,C:216-255)
1d: CATH_1ms7A01 (A:107-215)
1e: CATH_1ms7B01 (B:107-215)
1f: CATH_1ms7C01 (C:107-215)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Norway rat (Rattus norvegicus)
(84)
1a
1ms7A02
A:1-106,A:216-255
1b
1ms7B02
B:1-106,B:216-255
1c
1ms7C02
C:1-106,C:216-255
1d
1ms7A01
A:107-215
1e
1ms7B01
B:107-215
1f
1ms7C01
C:107-215
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
Biol.Unit 3 (148 KB)
Header - Biol.Unit 3
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