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1MR3
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
SACCHAROMYCES CEREVISIAE ADP-RIBOSYLATION FACTOR 2 (SCARF2) COMPLEXED WITH GDP-3'P AT 1.6A RESOLUTION
Authors
:
J. -C. Amor, J. R. Horton, X. Zhu, Y. Wang, C. Sullards, D. Ringe, X. Cheng
Date
:
17 Sep 02 (Deposition) - 20 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : F
Biol. Unit 1: F (1x)
Keywords
:
Gtp-Binding, Gdp-3'Phosphate, Small Gtpase, Signal Transduction, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Amor, J. R. Horton, X. Zhu, Y. Wang, C. Sullards, D. Ringe, X. Cheng R. A. Kahn
Structures Of Yeast Arf2 And Arl1: Distinct Roles For The N Terminus In The Structure And Function Of Arf Family Gtpases.
J. Biol. Chem. V. 276 42477 2001
[
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Hetero Components
(6, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
2c: ETHANOL (EOHc)
2d: ETHANOL (EOHd)
3a: GUANOSINE-3'-MONOPHOSPHATE-5'-DIPH... (G3Da)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: MAGNESIUM ION (MGa)
6a: 1,3-PROPANDIOL (PDOa)
6b: 1,3-PROPANDIOL (PDOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
2
EOH
4
Ligand/Ion
ETHANOL
3
G3D
1
Ligand/Ion
GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE
4
GOL
2
Ligand/Ion
GLYCEROL
5
MG
1
Ligand/Ion
MAGNESIUM ION
6
PDO
2
Ligand/Ion
1,3-PROPANDIOL
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR F:31 , G3D F:800 , HOH F:2078 , HOH F:2079 , HOH F:2080 , HOH F:2085
BINDING SITE FOR RESIDUE MG F 801
02
AC2
SOFTWARE
ASP F:26 , GLY F:27 , ALA F:28 , GLY F:29 , LYS F:30 , THR F:31 , THR F:32 , ASN F:126 , LYS F:127 , ASP F:129 , CYS F:159 , ALA F:160 , THR F:161 , MG F:801 , HOH F:2079 , HOH F:2085 , HOH F:2090 , HOH F:2091 , HOH F:2119 , HOH F:2139 , HOH F:2186 , HOH F:2189 , HOH F:2191 , HOH F:2193 , HOH F:2202 , HOH F:2233
BINDING SITE FOR RESIDUE G3D F 800
03
AC3
SOFTWARE
THR F:48 , ILE F:49 , GLY F:50 , PHE F:51 , SER F:135 , PDO F:2009 , EOH F:2047 , EDO F:2072 , HOH F:2098 , HOH F:2144
BINDING SITE FOR RESIDUE EDO F 2065
04
AC4
SOFTWARE
PRO F:152 , TRP F:153 , HOH F:2128
BINDING SITE FOR RESIDUE EDO F 2067
05
AC5
SOFTWARE
LYS F:16 , ASP F:93 , ASN F:95 , LEU F:130 , HOH F:2110 , HOH F:2187 , HOH F:2209
BINDING SITE FOR RESIDUE EDO F 2069
06
AC6
SOFTWARE
ASN F:112 , ASP F:114
BINDING SITE FOR RESIDUE EDO F 2071
07
AC7
SOFTWARE
THR F:48 , ARG F:75 , TRP F:78 , SER F:135 , PDO F:2009 , EOH F:2047 , EDO F:2065 , HOH F:2112 , HOH F:2222
BINDING SITE FOR RESIDUE EDO F 2072
08
AC8
SOFTWARE
THR F:32 , LYS F:36 , THR F:161 , HOH F:2089 , HOH F:2106 , HOH F:2189 , HOH F:2199
BINDING SITE FOR RESIDUE EDO F 2073
09
AC9
SOFTWARE
THR F:48 , ARG F:97 , GLU F:138 , HOH F:2185 , HOH F:2222 , HOH F:2260
BINDING SITE FOR RESIDUE EDO F 2074
10
BC1
SOFTWARE
ILE F:20 , LEU F:21 , THR F:64 , TYR F:81 , ASN F:84 , THR F:85 , HOH F:2195 , HOH F:2284
BINDING SITE FOR RESIDUE EDO F 2075
11
BC2
SOFTWARE
LYS F:36 , LYS F:38 , EDO F:2077
BINDING SITE FOR RESIDUE EDO F 2076
12
BC3
SOFTWARE
SER F:162 , GLY F:163 , GLU F:164 , EDO F:2076
BINDING SITE FOR RESIDUE EDO F 2077
13
BC4
SOFTWARE
ARG F:83 , GLU F:115 , ARG F:117 , ASN F:118 , HOH F:2162
BINDING SITE FOR RESIDUE GOL F 950
14
BC5
SOFTWARE
GLY F:50 , ASN F:52 , TRP F:66 , ASP F:67 , PDO F:2008 , PDO F:2009
BINDING SITE FOR RESIDUE GOL F 954
15
BC6
SOFTWARE
LEU F:25 , ASP F:93 , ASP F:96 , ARG F:99 , ILE F:100 , ALA F:103 , HOH F:2094
BINDING SITE FOR RESIDUE EOH F 2046
16
BC7
SOFTWARE
THR F:48 , PHE F:51 , ARG F:75 , TRP F:78 , SER F:135 , EDO F:2065 , EDO F:2072 , HOH F:2112 , HOH F:2222
BINDING SITE FOR RESIDUE EOH F 2047
17
BC8
SOFTWARE
GLN F:71 , GLN F:156 , GLU F:168 , HOH F:2188
BINDING SITE FOR RESIDUE EOH F 2048
18
BC9
SOFTWARE
ARG F:73 , HOH F:2190
BINDING SITE FOR RESIDUE EOH F 2049
19
CC1
SOFTWARE
ASN F:52 , GLU F:54 , VAL F:65 , TRP F:66 , ASP F:67 , GOL F:954 , HOH F:2078 , HOH F:2080
BINDING SITE FOR RESIDUE PDO F 2008
20
CC2
SOFTWARE
ASP F:72 , ARG F:73 , TRP F:78 , GOL F:954 , EDO F:2065 , EDO F:2072 , HOH F:2178
BINDING SITE FOR RESIDUE PDO F 2009
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARF (F:11-177)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARF
PS51417
small GTPase Arf family profile.
ARF2_YEAST
11-177
1
F:11-177
[
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (F:5-181)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDL137W
1
YDL137W.1
IV:216529-217074
546
ARF2_YEAST
1-181
181
1
F:5-181
177
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mr3f_ (F:)
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Classes
(
)
(
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Folds
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(
)
Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Baker's yeast (Saccharomyces cerevisiae), ARF2 [TaxId: 4932]
(1)
1a
d1mr3f_
F:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mr3F00 (F:5-181)
View:
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Classes
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Architectures
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Baker's yeast (Saccharomyces cerevisiae)
(61)
1a
1mr3F00
F:5-181
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Arf_1mr3F01 (F:5-177)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Arf
(26)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
1a
Arf-1mr3F01
F:5-177
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Protein & NOT Site
Protein & NOT PROSITE
Chain F
Asymmetric Unit 1
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