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1MQP
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (242 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-6
Authors
:
G. Golan, D. Shallom, A. Teplitsky, G. Zaide, S. Shulami, T. Baasov, V. S A. Thompson, Y. Shoham, G. Shoham
Date
:
17 Sep 02 (Deposition) - 23 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Golan, D. Shallom, A. Teplitsky, G. Zaide, S. Shulami, T. Baasov, V. Stojanoff, A. Thompson, Y. Shoham, G. Shoham
Crystal Structures Of Geobacillus Stearothermophilus Alpha-Glucuronidase Complexed With Its Substrate And Products: Mechanistic Implications.
J. Biol. Chem. V. 279 3014 2004
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:91 , TYR A:116 , HIS A:120 , ARG A:123 , SER A:189 , VAL A:190 , GLY A:191 , ARG A:467 , TRP A:470 , HOH A:884 , HOH A:930
BINDING SITE FOR RESIDUE GOL A 701
2
AC2
SOFTWARE
ARG A:368 , GLU A:369 , VAL A:371 , GLU A:409 , PHE A:413 , LEU A:585 , HOH A:809 , HOH A:848 , HOH A:983 , HOH A:1038
BINDING SITE FOR RESIDUE GOL A 702
3
AC3
SOFTWARE
LYS A:620 , LYS A:653 , ARG A:656 , HOH A:1011 , HOH A:1193
BINDING SITE FOR RESIDUE GOL A 703
4
AC4
SOFTWARE
SER A:19 , GLU A:129 , HIS A:599 , HOH A:890 , HOH A:918 , HOH A:1215
BINDING SITE FOR RESIDUE GOL A 704
5
AC5
SOFTWARE
TYR A:340 , ALA A:377 , ALA A:565 , GLN A:566 , TYR A:567 , PHE A:568 , PRO A:569
BINDING SITE FOR RESIDUE GOL A 705
6
AC6
SOFTWARE
ARG A:335 , HIS A:527 , TYR A:535 , TRP A:540 , HOH A:971
BINDING SITE FOR RESIDUE GOL A 706
7
AC7
SOFTWARE
GLU A:570 , MET A:574 , THR A:580 , HOH A:1218
BINDING SITE FOR RESIDUE GOL A 707
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1mqpa2 (A:3-142)
2a: SCOP_d1mqpa1 (A:143-679)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
alpha-D-glucuronidase, N-terminal domain
(12)
Protein domain
:
alpha-D-glucuronidase, N-terminal domain
(12)
Bacillus stearothermophilus [TaxId: 1422]
(7)
1a
d1mqpa2
A:3-142
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
alpha-D-glucuronidase/Hyaluronidase catalytic domain
(32)
Protein domain
:
alpha-D-glucuronidase catalytic domain
(12)
Bacillus stearothermophilus [TaxId: 1422]
(7)
2a
d1mqpa1
A:143-679
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1mqpA01 (A:16-140)
2a: CATH_1mqpA02 (A:141-473)
3a: CATH_1mqpA03 (A:474-679)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(2)
1a
1mqpA01
A:16-140
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(6)
2a
1mqpA02
A:141-473
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Homologous Superfamily
:
Alpha-d-glucuronidase, C-terminal Domain
(12)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(2)
3a
1mqpA03
A:474-679
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_67C_1mqpA01 (A:453-678)
2a: PFAM_Glyco_hydro_67M_1mqpA02 (A:122-452)
3a: PFAM_Glyco_hydro_67N_1mqpA03 (A:8-121)
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Clans
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)
Organisms
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)
(
)
Clan
:
no clan defined [family: Glyco_hydro_67C]
(5)
Family
:
Glyco_hydro_67C
(5)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(5)
1a
Glyco_hydro_67C-1mqpA01
A:453-678
Clan
:
no clan defined [family: Glyco_hydro_67M]
(5)
Family
:
Glyco_hydro_67M
(5)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(5)
2a
Glyco_hydro_67M-1mqpA02
A:122-452
Clan
:
no clan defined [family: Glyco_hydro_67N]
(5)
Family
:
Glyco_hydro_67N
(5)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(5)
3a
Glyco_hydro_67N-1mqpA03
A:8-121
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Chain A
Asymmetric Unit 1
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Asym.Unit (127 KB)
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