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1MQN
Biol. Unit 2
Info
Asym.Unit (255 KB)
Biol.Unit 1 (244 KB)
Biol.Unit 2 (482 KB)
Biol.Unit 3 (482 KB)
Biol.Unit 4 (484 KB)
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(1)
Title
:
BHA/LSTC
Authors
:
Y. Ha, D. J. Stevens, J. J. Skehel, D. C. Wiley
Date
:
16 Sep 02 (Deposition) - 26 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,D,E,G,H
Biol. Unit 1: A,B,D,E,G,H (1x)
Biol. Unit 2: A,B,D,E,G,H (2x)
Biol. Unit 3: A,B,D,E,G,H (2x)
Biol. Unit 4: A,B,D,E,G,H (2x)
Keywords
:
Influenza A Virus, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Ha, D. J. Stevens, J. J. Skehel, D. C. Wiley
X-Ray Structure Of The Hemagglutinin Of A Potential H3 Avia Progenitor Of The 1968 Hong Kong Pandemic Influenza Virus.
Virology V. 309 209 2003
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Hetero Components
(5, 58)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
38
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SIA
4
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , THR A:318 , HOH A:414 , LEU B:52
BINDING SITE FOR RESIDUE NAG A 400
02
AC2
SOFTWARE
ASN A:81 , GLU A:119 , PHE A:120 , NAG A:402
BINDING SITE FOR RESIDUE NAG A 401
03
AC3
SOFTWARE
NAG A:401
BINDING SITE FOR RESIDUE NAG A 402
04
AC4
SOFTWARE
ASN A:165 , THR A:167 , NAG A:404 , SER G:219
BINDING SITE FOR RESIDUE NAG A 403
05
AC5
SOFTWARE
NAG A:403 , BMA A:405 , PRO G:221 , TRP G:222
BINDING SITE FOR RESIDUE NAG A 404
06
AC6
SOFTWARE
NAG A:404 , MAN A:406
BINDING SITE FOR RESIDUE BMA A 405
07
AC7
SOFTWARE
BMA A:405
BINDING SITE FOR RESIDUE MAN A 406
08
AC8
SOFTWARE
ASN A:285 , VAL A:297 , ASN A:298 , NAG A:408 , GLU B:69
BINDING SITE FOR RESIDUE NAG A 407
09
AC9
SOFTWARE
LYS A:299 , NAG A:407
BINDING SITE FOR RESIDUE NAG A 408
10
BC1
SOFTWARE
ALA B:147 , GLU B:150 , SER B:151 , ASN B:154 , THR B:156 , HOH B:406 , HOH B:414
BINDING SITE FOR RESIDUE NAG B 400
11
BC2
SOFTWARE
ASN D:38 , THR D:318 , HOH D:429 , LEU E:52
BINDING SITE FOR RESIDUE NAG D 400
12
BC3
SOFTWARE
ASN D:81 , PHE D:120 , ILE D:121 , HOH D:425
BINDING SITE FOR RESIDUE NAG D 401
13
BC4
SOFTWARE
SER A:219 , ASN D:165 , THR D:167 , NAG D:403
BINDING SITE FOR RESIDUE NAG D 402
14
BC5
SOFTWARE
PRO A:221 , TRP A:222 , NAG D:402 , BMA D:404
BINDING SITE FOR RESIDUE NAG D 403
15
BC6
SOFTWARE
NAG D:403 , MAN D:405
BINDING SITE FOR RESIDUE BMA D 404
16
BC7
SOFTWARE
BMA D:404 , HOH D:413
BINDING SITE FOR RESIDUE MAN D 405
17
BC8
SOFTWARE
ALA E:147 , GLU E:150 , SER E:151 , ASN E:154 , THR E:156
BINDING SITE FOR RESIDUE NAG E 400
18
BC9
SOFTWARE
THR G:24 , ASN G:38 , ALA G:39
BINDING SITE FOR RESIDUE NAG G 400
19
CC1
SOFTWARE
GLN G:80 , ASN G:81 , PHE G:120
BINDING SITE FOR RESIDUE NAG G 401
20
CC2
SOFTWARE
SER D:219 , ASN G:165 , THR G:167 , NAG G:403
BINDING SITE FOR RESIDUE NAG G 402
21
CC3
SOFTWARE
PRO D:221 , TRP D:222 , NAG G:402 , BMA G:404
BINDING SITE FOR RESIDUE NAG G 403
22
CC4
SOFTWARE
TRP D:222 , NAG G:403 , MAN G:405
BINDING SITE FOR RESIDUE BMA G 404
23
CC5
SOFTWARE
BMA G:404
BINDING SITE FOR RESIDUE MAN G 405
24
CC6
SOFTWARE
ASN G:285 , VAL G:297 , ASN G:298 , GLU H:69
BINDING SITE FOR RESIDUE NAG G 406
25
CC7
SOFTWARE
ALA H:147 , GLU H:150 , SER H:151 , ASN H:154 , THR H:156
BINDING SITE FOR RESIDUE NAG H 400
26
CC8
SOFTWARE
TYR A:98 , GLY A:135 , SER A:136 , SER A:137 , TRP A:153 , THR A:155 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , GAL A:410
BINDING SITE FOR RESIDUE SIA A 409
27
CC9
SOFTWARE
SIA A:409
BINDING SITE FOR RESIDUE GAL A 410
28
DC1
SOFTWARE
TYR D:98 , GLY D:135 , SER D:136 , SER D:137 , TRP D:153 , THR D:155 , GLU D:190 , LEU D:194 , GLN D:226 , GAL D:407
BINDING SITE FOR RESIDUE SIA D 406
29
DC2
SOFTWARE
GLN D:226 , SIA D:406
BINDING SITE FOR RESIDUE GAL D 407
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1mqna_ (A:)
1b: SCOP_d1mqnd_ (D:)
1c: SCOP_d1mqng_ (G:)
2a: SCOP_d1mqnb_ (B:)
2b: SCOP_d1mqne_ (E:)
2c: SCOP_d1mqnh_ (H:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1mqna_
A:
1b
d1mqnd_
D:
1c
d1mqng_
G:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1mqnb_
B:
2b
d1mqne_
E:
2c
d1mqnh_
H:
[
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]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1mqnA01 (A:57-272)
1b: CATH_1mqnD01 (D:57-272)
1c: CATH_1mqnG01 (G:57-272)
2a: CATH_1mqnB00 (B:1-172)
2b: CATH_1mqnE00 (E:1-172)
2c: CATH_1mqnH00 (H:1-172)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus. Organism_taxid: 11320.
(6)
1a
1mqnA01
A:57-272
1b
1mqnD01
D:57-272
1c
1mqnG01
G:57-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus. Organism_taxid: 11320.
(6)
2a
1mqnB00
B:1-172
2b
1mqnE00
E:1-172
2c
1mqnH00
H:1-172
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1mqnH01 (H:1-172)
1b: PFAM_Hemagglutinin_1mqnH02 (H:1-172)
1c: PFAM_Hemagglutinin_1mqnH03 (H:1-172)
1d: PFAM_Hemagglutinin_1mqnH04 (H:1-172)
1e: PFAM_Hemagglutinin_1mqnH05 (H:1-172)
1f: PFAM_Hemagglutinin_1mqnH06 (H:1-172)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Duck/Ukraine/1/1963 H3N8)
(3)
1a
Hemagglutinin-1mqnH01
H:1-172
1b
Hemagglutinin-1mqnH02
H:1-172
1c
Hemagglutinin-1mqnH03
H:1-172
1d
Hemagglutinin-1mqnH04
H:1-172
1e
Hemagglutinin-1mqnH05
H:1-172
1f
Hemagglutinin-1mqnH06
H:1-172
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (255 KB)
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Biol.Unit 1 (244 KB)
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Biol.Unit 2 (482 KB)
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Biol.Unit 3 (482 KB)
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