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1MPX
Asym. Unit
Info
Asym.Unit (450 KB)
Biol.Unit 1 (437 KB)
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(1)
Title
:
ALPHA-AMINO ACID ESTER HYDROLASE LABELED WITH SELENOMETHIONINE
Authors
:
T. R. M. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. M. H. Hensgens, Vries, D. B. Janssen, B. W. Dijkstra
Date
:
13 Sep 02 (Deposition) - 15 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Alpha/Beta Hydrolase, Jellyroll, Selenomethionine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. R. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. M. Hensgens, E. J. De Vries, D. B. Janssen, B. W. Dijkstra
The Sequence And Crystal Structure Of The Alpha-Amino Acid Ester Hydrolase From Xanthomonas Citri Define A New Family Of Beta-Lactam Antibiotic Acylases.
J. Biol. Chem. V. 278 23076 2003
[
close entry info
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Hetero Components
(3, 86)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3be: SELENOMETHIONINE (MSEbe)
3bf: SELENOMETHIONINE (MSEbf)
3bg: SELENOMETHIONINE (MSEbg)
3bh: SELENOMETHIONINE (MSEbh)
3bi: SELENOMETHIONINE (MSEbi)
3bj: SELENOMETHIONINE (MSEbj)
3bk: SELENOMETHIONINE (MSEbk)
3bl: SELENOMETHIONINE (MSEbl)
3bm: SELENOMETHIONINE (MSEbm)
3bn: SELENOMETHIONINE (MSEbn)
3bo: SELENOMETHIONINE (MSEbo)
3bp: SELENOMETHIONINE (MSEbp)
3bq: SELENOMETHIONINE (MSEbq)
3br: SELENOMETHIONINE (MSEbr)
3bs: SELENOMETHIONINE (MSEbs)
3bt: SELENOMETHIONINE (MSEbt)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GOL
10
Ligand/Ion
GLYCEROL
3
MSE
72
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:322 , ASP A:325 , ASN A:328 , ASN A:331 , HOH A:3051 , HOH A:3085
BINDING SITE FOR RESIDUE CA A 638
02
AC2
SOFTWARE
GLU B:322 , ASP B:325 , ASN B:328 , ASN B:331 , HOH B:3021 , HOH B:3032
BINDING SITE FOR RESIDUE CA B 638
03
AC3
SOFTWARE
GLU C:322 , ASP C:325 , ASN C:328 , ASN C:331 , HOH C:3019 , HOH C:3064
BINDING SITE FOR RESIDUE CA C 638
04
AC4
SOFTWARE
GLU D:322 , ASP D:325 , ASN D:328 , ASN D:331 , HOH D:3052 , HOH D:3092
BINDING SITE FOR RESIDUE CA D 638
05
AC5
SOFTWARE
ARG C:55 , TRP C:151 , ASN C:186 , HOH C:3146 , HOH C:3350 , HOH C:3488
BINDING SITE FOR RESIDUE GOL C 3001
06
AC6
SOFTWARE
GLY A:240 , HIS A:241 , ASP A:458 , HOH A:3078 , HOH A:3169 , GLU D:526
BINDING SITE FOR RESIDUE GOL A 3002
07
AC7
SOFTWARE
ARG B:238 , GLY B:240 , HIS B:241 , ASP B:458 , HOH B:3081 , HOH B:3297 , GLU C:526
BINDING SITE FOR RESIDUE GOL B 3004
08
AC8
SOFTWARE
GLU B:526 , HOH B:3064 , HOH B:3215 , GLY C:240 , HIS C:241 , ASP C:458
BINDING SITE FOR RESIDUE GOL B 3005
09
AC9
SOFTWARE
ASP A:445 , PRO A:446 , ALA A:447 , TYR A:615 , LYS A:617 , HOH A:3194 , HOH A:3214 , HOH A:3313
BINDING SITE FOR RESIDUE GOL A 3006
10
BC1
SOFTWARE
GLU A:526 , GLY D:240 , HIS D:241 , ASP D:458 , HOH D:3013 , HOH D:3088
BINDING SITE FOR RESIDUE GOL D 3007
11
BC2
SOFTWARE
ASP C:445 , PRO C:446 , ALA C:447 , TYR C:615 , LYS C:617 , HOH C:3115 , HOH C:3143 , HOH C:3197
BINDING SITE FOR RESIDUE GOL C 3008
12
BC3
SOFTWARE
ASP B:445 , PRO B:446 , ALA B:447 , TYR B:615 , LYS B:617 , HOH B:3145 , HOH B:3154 , HOH B:3394
BINDING SITE FOR RESIDUE GOL B 3009
13
BC4
SOFTWARE
ASP D:445 , PRO D:446 , ALA D:447 , TYR D:615 , LYS D:617 , HOH D:3097 , HOH D:3266 , HOH D:3306
BINDING SITE FOR RESIDUE GOL D 3010
14
BC5
SOFTWARE
ARG A:55 , TRP A:151 , ASN A:186 , HOH A:3276
BINDING SITE FOR RESIDUE GOL A 3011
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1mpxa1 (A:405-637)
1b: SCOP_d1mpxb1 (B:405-637)
1c: SCOP_d1mpxc1 (C:405-637)
1d: SCOP_d1mpxd1 (D:405-637)
2a: SCOP_d1mpxa2 (A:24-404)
2b: SCOP_d1mpxb2 (B:24-404)
2c: SCOP_d1mpxc2 (C:24-404)
2d: SCOP_d1mpxd2 (D:24-404)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PepX C-terminal domain-like
(10)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Xanthomonas citri [TaxId: 346]
(1)
1a
d1mpxa1
A:405-637
1b
d1mpxb1
B:405-637
1c
d1mpxc1
C:405-637
1d
d1mpxd1
D:405-637
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
PepX catalytic domain-like
(19)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Xanthomonas citri [TaxId: 346]
(1)
2a
d1mpxa2
A:24-404
2b
d1mpxb2
B:24-404
2c
d1mpxc2
C:24-404
2d
d1mpxd2
D:24-404
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1mpxA01 (A:43-207,A:294-399)
1b: CATH_1mpxB01 (B:43-207,B:294-399)
1c: CATH_1mpxC01 (C:43-207,C:294-399)
1d: CATH_1mpxD01 (D:43-207,D:294-399)
2a: CATH_1mpxA02 (A:209-275)
2b: CATH_1mpxB02 (B:209-275)
2c: CATH_1mpxC02 (C:209-275)
2d: CATH_1mpxD02 (D:209-275)
3a: CATH_1mpxA03 (A:400-637)
3b: CATH_1mpxB03 (B:400-637)
3c: CATH_1mpxC03 (C:400-637)
3d: CATH_1mpxD03 (D:400-637)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Xanthomonas citri. Organism_taxid: 346.
(2)
1a
1mpxA01
A:43-207,A:294-399
1b
1mpxB01
B:43-207,B:294-399
1c
1mpxC01
C:43-207,C:294-399
1d
1mpxD01
D:43-207,D:294-399
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Homologous Superfamily
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Xanthomonas citri. Organism_taxid: 346.
(1)
2a
1mpxA02
A:209-275
2b
1mpxB02
B:209-275
2c
1mpxC02
C:209-275
2d
1mpxD02
D:209-275
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Xanthomonas citri. Organism_taxid: 346.
(1)
3a
1mpxA03
A:400-637
3b
1mpxB03
B:400-637
3c
1mpxC03
C:400-637
3d
1mpxD03
D:400-637
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Peptidase_S15_1mpxD01 (D:56-342)
1b: PFAM_Peptidase_S15_1mpxD02 (D:56-342)
1c: PFAM_Peptidase_S15_1mpxD03 (D:56-342)
1d: PFAM_Peptidase_S15_1mpxD04 (D:56-342)
2a: PFAM_PepX_C_1mpxD05 (D:381-633)
2b: PFAM_PepX_C_1mpxD06 (D:381-633)
2c: PFAM_PepX_C_1mpxD07 (D:381-633)
2d: PFAM_PepX_C_1mpxD08 (D:381-633)
View:
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S15
(7)
Xanthomonas campestris pv. citri
(1)
1a
Peptidase_S15-1mpxD01
D:56-342
1b
Peptidase_S15-1mpxD02
D:56-342
1c
Peptidase_S15-1mpxD03
D:56-342
1d
Peptidase_S15-1mpxD04
D:56-342
Clan
:
GBD
(153)
Family
:
PepX_C
(7)
Xanthomonas campestris pv. citri
(1)
2a
PepX_C-1mpxD05
D:381-633
2b
PepX_C-1mpxD06
D:381-633
2c
PepX_C-1mpxD07
D:381-633
2d
PepX_C-1mpxD08
D:381-633
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Asym.Unit (450 KB)
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