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1MP1
Asym. Unit
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Asym.Unit (560 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PWI MOTIF FROM SRM160
Authors
:
B. R. Szymczyna, J. Bowman, S. Mccracken, A. Pineda-Lucena, Y. Lu, B. Cox, M. Lambermon, B. R. Graveley, C. H. Arrowsmith, B. J. Blencowe
Date
:
11 Sep 02 (Deposition) - 16 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Four Helix Bundle, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. R. Szymczyna, J. Bowman, S. Mccracken, A. Pineda-Lucena, Y. Lu, B. Cox, M. Lambermon, B. R. Graveley, C. H. Arrowsmith, B. J. Blencowe
Structure And Function Of The Pwi Motif: A Novel Nucleic Acid-Binding Domain That Facilitates Pre-Mrna Processing.
Genes Dev. V. 17 461 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PWI (A:27-126)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PWI
PS51025
PWI domain profile.
SRRM1_HUMAN
27-126
1
A:27-126
[
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Exons
(3, 3)
Info
All Exons
Exon 1.5 (A:24-37 (gaps))
Exon 1.6a (A:38-78)
Exon 1.6h (A:79-134)
View:
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All Exon Boundaries
1: Boundary 1.4a/1.5
2: Boundary 1.5/1.6a
3: Boundary 1.6a/1.6h
4: Boundary 1.6h/1.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000323848
4a
ENSE00002145508
chr1:
24969594-24969838
245
SRRM1_HUMAN
1-7
7
0
-
-
1.5
ENST00000323848
5
ENSE00001768046
chr1:
24972475-24972564
90
SRRM1_HUMAN
8-37
30
1
A:24-37 (gaps)
20
1.6a
ENST00000323848
6a
ENSE00001717192
chr1:
24973158-24973280
123
SRRM1_HUMAN
38-78
41
1
A:38-78
41
1.6h
ENST00000323848
6h
ENSE00001701767
chr1:
24975350-24975520
171
SRRM1_HUMAN
79-135
57
1
A:79-134
56
1.7b
ENST00000323848
7b
ENSE00001036950
chr1:
24976462-24976577
116
SRRM1_HUMAN
136-174
39
0
-
-
1.9a
ENST00000323848
9a
ENSE00000839641
chr1:
24977900-24978103
204
SRRM1_HUMAN
174-242
69
0
-
-
1.10d
ENST00000323848
10d
ENSE00000839643
chr1:
24978925-24979119
195
SRRM1_HUMAN
242-307
66
0
-
-
1.11a
ENST00000323848
11a
ENSE00000839644
chr1:
24979404-24979523
120
SRRM1_HUMAN
307-347
41
0
-
-
1.13b
ENST00000323848
13b
ENSE00001736813
chr1:
24981346-24981620
275
SRRM1_HUMAN
347-439
93
0
-
-
1.14a
ENST00000323848
14a
ENSE00001687798
chr1:
24987210-24987290
81
SRRM1_HUMAN
439-466
28
0
-
-
1.15a
ENST00000323848
15a
ENSE00001668356
chr1:
24987801-24987887
87
SRRM1_HUMAN
466-495
30
0
-
-
1.16a
ENST00000323848
16a
ENSE00001696627
chr1:
24989151-24989295
145
SRRM1_HUMAN
495-543
49
0
-
-
1.18b
ENST00000323848
18b
ENSE00001741254
chr1:
24993306-24993416
111
SRRM1_HUMAN
543-580
38
0
-
-
1.19b
ENST00000323848
19b
ENSE00001734803
chr1:
24995614-24996078
465
SRRM1_HUMAN
580-735
156
0
-
-
1.19d
ENST00000323848
19d
ENSE00001616511
chr1:
24996611-24996806
196
SRRM1_HUMAN
735-800
66
0
-
-
1.20c
ENST00000323848
20c
ENSE00001642264
chr1:
24997877-24998086
210
SRRM1_HUMAN
801-870
70
0
-
-
1.21b
ENST00000323848
21b
ENSE00001942867
chr1:
24998673-24999758
1086
SRRM1_HUMAN
871-904
34
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mp1a_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
PWI domain
(1)
Superfamily
:
PWI domain
(1)
Family
:
PWI domain
(1)
Protein domain
:
Ser/Arg-related nuclear matrix protein srm160
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1mp1a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mp1A00 (A:24-134)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
PWI domain
(1)
Homologous Superfamily
:
PWI domain
(1)
Human (Homo sapiens)
(1)
1a
1mp1A00
A:24-134
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PWI_1mp1A01 (A:45-118)
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Clan
:
no clan defined [family: PWI]
(2)
Family
:
PWI
(2)
Homo sapiens (Human)
(2)
1a
PWI-1mp1A01
A:45-118
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Chain A
Asymmetric Unit 1
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Asym.Unit (560 KB)
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