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Asym. Unit
Info
Asym.Unit (333 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (167 KB)
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(1)
Title
:
NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE
Authors
:
B. Nocek, S. B. Jang, M. S. Jeong, D. D. Clark, S. A. Ensign, J. W. Peters
Date
:
09 Sep 02 (Deposition) - 27 Nov 02 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nucleotide Binding Motifs, Nucleotide Binding Domain, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Nocek, S. B. Jang, M. S. Jeong, D. D. Clark, S. A. Ensign, J. W. Peters
Structural Basis For Co2 Fixation By A Novel Member Of The Disulfide Oxidoreductase Family Of Enzymes, 2-Ketopropyl Coenzyme M Oxidoreductase/Carboxylase
Biochemistry V. 41 12907 2002
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:50 , GLY A:52 , ALA A:53 , ALA A:54 , ASP A:73 , ARG A:74 , TRP A:75 , GLY A:80 , SER A:81 , ALA A:86 , CYS A:87 , HIS A:90 , HIS A:91 , PRO A:157 , ALA A:158 , ALA A:181 , VAL A:182 , HIS A:202 , THR A:225 , TYR A:229 , GLY A:352 , ASP A:353 , MET A:359 , GLU A:360 , MET A:361 , ALA A:364 , PHE A:390 , PHE B:501
BINDING SITE FOR RESIDUE FAD A 524
2
AC2
SOFTWARE
PHE A:501 , GLY B:50 , GLY B:51 , ALA B:53 , ALA B:54 , ASP B:73 , ARG B:74 , TRP B:75 , GLY B:80 , SER B:81 , ALA B:86 , CYS B:87 , HIS B:90 , HIS B:91 , PRO B:157 , ALA B:158 , ALA B:181 , VAL B:182 , GLY B:183 , HIS B:202 , THR B:225 , GLU B:314 , GLY B:352 , ASP B:353 , MET B:359 , GLU B:360 , MET B:361 , ALA B:364
BINDING SITE FOR RESIDUE FAD B 524
3
AC3
SOFTWARE
GLY C:50 , ALA C:53 , ALA C:54 , ASP C:73 , ARG C:74 , TRP C:75 , GLY C:80 , SER C:81 , ALA C:86 , CYS C:87 , HIS C:90 , HIS C:91 , PRO C:157 , ALA C:158 , ALA C:181 , VAL C:182 , GLY C:183 , HIS C:202 , THR C:225 , TYR C:229 , GLY C:352 , ASP C:353 , MET C:359 , GLU C:360 , MET C:361 , PHE D:501
BINDING SITE FOR RESIDUE FAD C 524
4
AC4
SOFTWARE
PHE C:501 , GLY D:50 , GLY D:52 , ALA D:53 , ALA D:54 , VAL D:72 , ASP D:73 , ARG D:74 , TRP D:75 , GLY D:80 , SER D:81 , ALA D:86 , CYS D:87 , HIS D:90 , HIS D:91 , PRO D:157 , ALA D:158 , ALA D:181 , VAL D:182 , HIS D:202 , THR D:225 , TYR D:229 , GLY D:352 , ASP D:353 , MET D:359 , GLU D:360 , MET D:361 , ALA D:364 , PHE D:390
BINDING SITE FOR RESIDUE FAD D 524
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1moka3 (A:384-523)
1b: SCOP_d1mokc3 (C:384-523)
1c: SCOP_d1mokd3 (D:384-523)
1d: SCOP_d1mokb3 (B:384-523)
2a: SCOP_d1moka1 (A:2-192,A:314-383)
2b: SCOP_d1moka2 (A:193-313)
2c: SCOP_d1mokb1 (B:2-192,B:314-383)
2d: SCOP_d1mokb2 (B:193-313)
2e: SCOP_d1mokc1 (C:2-192,C:314-383)
2f: SCOP_d1mokc2 (C:193-313)
2g: SCOP_d1mokd1 (D:2-192,D:314-383)
2h: SCOP_d1mokd2 (D:193-313)
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Families
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
(5)
Xanthobacter sp., py2 [TaxId: 35809]
(5)
1a
d1moka3
A:384-523
1b
d1mokc3
C:384-523
1c
d1mokd3
D:384-523
1d
d1mokb3
B:384-523
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
(5)
Xanthobacter sp., py2 [TaxId: 35809]
(5)
2a
d1moka1
A:2-192,A:314-383
2b
d1moka2
A:193-313
2c
d1mokb1
B:2-192,B:314-383
2d
d1mokb2
B:193-313
2e
d1mokc1
C:2-192,C:314-383
2f
d1mokc2
C:193-313
2g
d1mokd1
D:2-192,D:314-383
2h
d1mokd2
D:193-313
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1mokA03 (A:254-268,A:386-523)
1b: CATH_1mokB03 (B:254-268,B:386-523)
1c: CATH_1mokC03 (C:254-268,C:386-523)
1d: CATH_1mokD03 (D:254-268,D:386-523)
2a: CATH_1mokA01 (A:2-85,A:132-186,A:314-378)
2b: CATH_1mokC02 (C:87-131,C:197-244,C:270-311)
2c: CATH_1mokD02 (D:87-131,D:197-244,D:270-311)
2d: CATH_1mokB01 (B:2-85,B:132-186,B:314-378)
2e: CATH_1mokC01 (C:2-85,C:132-186,C:314-378)
2f: CATH_1mokD01 (D:2-85,D:132-186,D:314-378)
2g: CATH_1mokA02 (A:87-131,A:197-244,A:270-311)
2h: CATH_1mokB02 (B:87-131,B:197-244,B:270-311)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Xanthobacter autotrophicus py2. Organism_taxid: 78245. Strain: py2
(2)
1a
1mokA03
A:254-268,A:386-523
1b
1mokB03
B:254-268,B:386-523
1c
1mokC03
C:254-268,C:386-523
1d
1mokD03
D:254-268,D:386-523
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Xanthobacter autotrophicus py2. Organism_taxid: 78245. Strain: py2
(2)
2a
1mokA01
A:2-85,A:132-186,A:314-378
2b
1mokC02
C:87-131,C:197-244,C:270-311
2c
1mokD02
D:87-131,D:197-244,D:270-311
2d
1mokB01
B:2-85,B:132-186,B:314-378
2e
1mokC01
C:2-85,C:132-186,C:314-378
2f
1mokD01
D:2-85,D:132-186,D:314-378
2g
1mokA02
A:87-131,A:197-244,A:270-311
2h
1mokB02
B:87-131,B:197-244,B:270-311
[
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Pyr_redox_1mokD01 (D:216-299)
1b: PFAM_Pyr_redox_1mokD02 (D:216-299)
1c: PFAM_Pyr_redox_1mokD03 (D:216-299)
1d: PFAM_Pyr_redox_1mokD04 (D:216-299)
2a: PFAM_Pyr_redox_2_1mokD05 (D:45-359)
2b: PFAM_Pyr_redox_2_1mokD06 (D:45-359)
2c: PFAM_Pyr_redox_2_1mokD07 (D:45-359)
2d: PFAM_Pyr_redox_2_1mokD08 (D:45-359)
3a: PFAM_Pyr_redox_dim_1mokD09 (D:387-512)
3b: PFAM_Pyr_redox_dim_1mokD10 (D:387-512)
3c: PFAM_Pyr_redox_dim_1mokD11 (D:387-512)
3d: PFAM_Pyr_redox_dim_1mokD12 (D:387-512)
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Clans
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Organisms
(
)
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)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
(3)
1a
Pyr_redox-1mokD01
D:216-299
1b
Pyr_redox-1mokD02
D:216-299
1c
Pyr_redox-1mokD03
D:216-299
1d
Pyr_redox-1mokD04
D:216-299
Family
:
Pyr_redox_2
(69)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
(3)
2a
Pyr_redox_2-1mokD05
D:45-359
2b
Pyr_redox_2-1mokD06
D:45-359
2c
Pyr_redox_2-1mokD07
D:45-359
2d
Pyr_redox_2-1mokD08
D:45-359
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
(3)
3a
Pyr_redox_dim-1mokD09
D:387-512
3b
Pyr_redox_dim-1mokD10
D:387-512
3c
Pyr_redox_dim-1mokD11
D:387-512
3d
Pyr_redox_dim-1mokD12
D:387-512
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