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1MOJ
Asym. Unit
Info
Asym.Unit (122 KB)
Biol.Unit 1 (343 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ARCHAEAL DPS-HOMOLOGUE FROM HALOBACTERIUM SALINARUM
Authors
:
K. Zeth, S. Offermann, L. O. Essen, D. Oesterhelt
Date
:
09 Sep 02 (Deposition) - 20 Apr 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Dps, Ferritin, Four-Helix Bundle, Halophilic, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Zeth, S. Offermann, L. O. Essen, D. Oesterhelt
Iron-Oxo Clusters Biomineralizing On Protein Surfaces: Structural Analysis Of Halobacterium Salinarum Dpsa In Its Low- And High-Iron States.
Proc. Natl. Acad. Sci. Usa V. 101 13780 2004
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
6
Ligand/Ion
FE (III) ION
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
NA
2
Ligand/Ion
SODIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:52 , ASP B:79 , GLU B:83 , HOH B:350 , HOH B:351
BINDING SITE FOR RESIDUE FE B 301
02
AC2
SOFTWARE
ASP A:79 , GLU A:83 , HOH A:354 , HIS B:52 , HOH B:353
BINDING SITE FOR RESIDUE FE A 302
03
AC3
SOFTWARE
HIS C:52 , ASP D:79 , GLU D:83 , HOH D:347 , HOH D:348
BINDING SITE FOR RESIDUE FE D 303
04
AC4
SOFTWARE
ASP C:79 , GLU C:83 , HOH C:351 , HOH C:352 , HIS D:52
BINDING SITE FOR RESIDUE FE C 304
05
AC5
SOFTWARE
GLU B:154 , HOH B:362
BINDING SITE FOR RESIDUE FE B 305
06
AC6
SOFTWARE
GLU A:154 , HOH A:367 , GLU C:154 , HOH C:360 , GLU D:154 , HOH D:358
BINDING SITE FOR RESIDUE FE A 306
07
AC7
SOFTWARE
GLN A:86 , GLU B:56 , HIS D:168 , HOH D:362 , HOH D:363 , HOH D:379
BINDING SITE FOR RESIDUE MG D 307
08
AC8
SOFTWARE
HIS A:168 , HOH A:373 , HOH A:374 , GLN C:86 , HOH C:383 , GLU D:56
BINDING SITE FOR RESIDUE MG C 308
09
AC9
SOFTWARE
GLU A:56 , GLN B:86 , HIS B:168 , HOH B:385 , HOH B:386 , HOH B:387
BINDING SITE FOR RESIDUE MG B 309
10
BC1
SOFTWARE
GLU C:56 , HIS C:168 , HOH C:348 , HOH C:378 , HOH C:379 , GLN D:86
BINDING SITE FOR RESIDUE MG C 310
11
BC2
SOFTWARE
GLU A:59 , GLU B:59 , GLU D:59
BINDING SITE FOR RESIDUE NA A 311
12
BC3
SOFTWARE
GLU C:59
BINDING SITE FOR RESIDUE NA C 312
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1moja_ (A:)
1b: SCOP_d1mojb_ (B:)
1c: SCOP_d1mojc_ (C:)
1d: SCOP_d1mojd_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Halobacterium salinarum [TaxId: 2242]
(5)
1a
d1moja_
A:
1b
d1mojb_
B:
1c
d1mojc_
C:
1d
d1mojd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1mojB00 (B:7-181)
1b: CATH_1mojC00 (C:7-181)
1c: CATH_1mojD00 (D:7-181)
1d: CATH_1mojA00 (A:2-181)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Halobacterium salinarum. Organism_taxid: 2242. Strain: tom
(4)
1a
1mojB00
B:7-181
1b
1mojC00
C:7-181
1c
1mojD00
D:7-181
1d
1mojA00
A:2-181
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ferritin_1mojD01 (D:31-176)
1b: PFAM_Ferritin_1mojD02 (D:31-176)
1c: PFAM_Ferritin_1mojD03 (D:31-176)
1d: PFAM_Ferritin_1mojD04 (D:31-176)
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Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Halobacterium salinarium (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
(5)
1a
Ferritin-1mojD01
D:31-176
1b
Ferritin-1mojD02
D:31-176
1c
Ferritin-1mojD03
D:31-176
1d
Ferritin-1mojD04
D:31-176
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