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1MO9
Asym. Unit
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Asym.Unit (190 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE COMPLEXED WITH 2-KETOPROPYL COENZYME M
Authors
:
B. Nocek, S. B. Jang, M. S. Jeong, D. D. Clark, S. A. Ensign, J. W. Peters
Date
:
08 Sep 02 (Deposition) - 27 Nov 02 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nucleotide Binding Motifs, Nucleotide Binding Domain, Oxidoreductase
(Keyword Search:
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Reference
:
B. Nocek, S. B. Jang, M. S. Jeong, D. D. Clark, S. A. Ensign, J. W. Peters
Structural Basis For Co2 Fixation By A Novel Member Of The Disulfide Oxidoreductase Family Of Enzymes, 2-Ketopropyl Coenzyme M Oxidoreductase/Carboxylase
Biochemistry V. 41 12907 2002
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: (2-[2-KETOPROPYLTHIO]ETHANESULFONA... (KPCa)
2b: (2-[2-KETOPROPYLTHIO]ETHANESULFONA... (KPCb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
KPC
2
Ligand/Ion
(2-[2-KETOPROPYLTHIO]ETHANESULFONATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:50 , GLY A:52 , ALA A:53 , ALA A:54 , ASP A:73 , ARG A:74 , TRP A:75 , GLY A:80 , SER A:81 , ALA A:86 , CYS A:87 , HIS A:90 , HIS A:91 , ALA A:158 , ALA A:181 , VAL A:182 , GLY A:183 , HIS A:202 , THR A:225 , TYR A:229 , GLY A:352 , ASP A:353 , MET A:359 , GLU A:360 , MET A:361 , ALA A:364 , HOH A:1017 , HOH A:1018 , HOH A:1028 , HOH A:1059 , HOH A:1066 , HOH A:1131 , HOH A:1165 , HOH A:1192 , HOH A:1401 , PHE B:501 , HOH B:1025
BINDING SITE FOR RESIDUE FAD A 1013
2
AC2
SOFTWARE
PHE A:501 , HOH A:1029 , GLY B:50 , GLY B:52 , ALA B:53 , ALA B:54 , VAL B:72 , ASP B:73 , ARG B:74 , TRP B:75 , GLY B:80 , SER B:81 , ALA B:86 , CYS B:87 , HIS B:90 , HIS B:91 , PRO B:157 , ALA B:158 , ALA B:181 , VAL B:182 , GLY B:183 , HIS B:202 , TYR B:229 , GLY B:352 , ASP B:353 , MET B:359 , GLU B:360 , MET B:361 , ALA B:364 , PHE B:390 , HOH B:1048 , HOH B:1061 , HOH B:1065 , HOH B:1074 , HOH B:1081 , HOH B:1100 , HOH B:1321 , HOH B:1358
BINDING SITE FOR RESIDUE FAD B 1014
3
AC3
SOFTWARE
ALA A:53 , ARG A:56 , PHE A:57 , GLY A:79 , PRO A:83 , PRO A:136 , MET A:140 , MET A:361 , ARG A:365 , HOH A:1127 , HOH A:1169
BINDING SITE FOR RESIDUE KPC A 1015
4
AC4
SOFTWARE
ARG B:56 , PHE B:57 , GLY B:79 , PRO B:83 , PRO B:136 , MET B:140 , MET B:361 , ARG B:365 , HOH B:1119 , HOH B:1159
BINDING SITE FOR RESIDUE KPC B 1016
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1mo9a3 (A:384-523)
1b: SCOP_d1mo9b3 (B:384-523)
2a: SCOP_d1mo9a1 (A:2-192,A:314-383)
2b: SCOP_d1mo9a2 (A:193-313)
2c: SCOP_d1mo9b1 (B:2-192,B:314-383)
2d: SCOP_d1mo9b2 (B:193-313)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
(5)
Xanthobacter sp., py2 [TaxId: 35809]
(5)
1a
d1mo9a3
A:384-523
1b
d1mo9b3
B:384-523
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
(5)
Xanthobacter sp., py2 [TaxId: 35809]
(5)
2a
d1mo9a1
A:2-192,A:314-383
2b
d1mo9a2
A:193-313
2c
d1mo9b1
B:2-192,B:314-383
2d
d1mo9b2
B:193-313
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1mo9A03 (A:254-268,A:386-523)
1b: CATH_1mo9B03 (B:254-268,B:386-523)
2a: CATH_1mo9A01 (A:2-85,A:132-186,A:314-378)
2b: CATH_1mo9B01 (B:2-85,B:132-186,B:314-378)
2c: CATH_1mo9A02 (A:87-131,A:197-244,A:270-311)
2d: CATH_1mo9B02 (B:87-131,B:197-244,B:270-311)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Xanthobacter autotrophicus py2. Organism_taxid: 78245. Strain: py2
(2)
1a
1mo9A03
A:254-268,A:386-523
1b
1mo9B03
B:254-268,B:386-523
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Xanthobacter autotrophicus py2. Organism_taxid: 78245. Strain: py2
(2)
2a
1mo9A01
A:2-85,A:132-186,A:314-378
2b
1mo9B01
B:2-85,B:132-186,B:314-378
2c
1mo9A02
A:87-131,A:197-244,A:270-311
2d
1mo9B02
B:87-131,B:197-244,B:270-311
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Pyr_redox_1mo9B01 (B:216-299)
1b: PFAM_Pyr_redox_1mo9B02 (B:216-299)
2a: PFAM_Pyr_redox_2_1mo9B03 (B:45-359)
2b: PFAM_Pyr_redox_2_1mo9B04 (B:45-359)
3a: PFAM_Pyr_redox_dim_1mo9B05 (B:387-512)
3b: PFAM_Pyr_redox_dim_1mo9B06 (B:387-512)
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(
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Organisms
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)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
(3)
1a
Pyr_redox-1mo9B01
B:216-299
1b
Pyr_redox-1mo9B02
B:216-299
Family
:
Pyr_redox_2
(69)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
(3)
2a
Pyr_redox_2-1mo9B03
B:45-359
2b
Pyr_redox_2-1mo9B04
B:45-359
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
(3)
3a
Pyr_redox_dim-1mo9B05
B:387-512
3b
Pyr_redox_dim-1mo9B06
B:387-512
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