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1MNU
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
UNLIGANDED BACTERICIDAL ANTIBODY AGAINST NEISSERIA MENINGITIDIS
Authors
:
J. Van Den Elsen, L. Vandeputte-Rutten, J. Kroon, P. Gros
Date
:
30 Apr 99 (Deposition) - 06 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Murine Immunoglobulin Igg2A Kappa, Bactericidal Antibody, Epitope P1. 16 Of Pora From Neisseria Meningitidis, Unliganded, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Van Den Elsen, L. Vandeputte-Rutten, J. Kroon, P. Gros
Bactericidal Antibody Recognition Of Meningococcal Pora By Induced Fit. Comparison Of Liganded And Unliganded Fab Structures.
J. Biol. Chem. V. 274 1495 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
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No.
Name
Count
Type
Full Name
1
CD
3
Ligand/Ion
CADMIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS L:98 , GLU L:218 , HOH L:316
BINDING SITE FOR RESIDUE CD L 220
2
AC2
SOFTWARE
HIS H:172 , HOH H:303 , ASN L:143
BINDING SITE FOR RESIDUE CD L 221
3
AC3
SOFTWARE
ASP H:181 , GLU L:190 , HIS L:194 , HOH L:317
BINDING SITE FOR RESIDUE CD L 222
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1mnuh2 (H:122-222)
2a: SCOP_d1mnul2 (L:113-219)
3a: SCOP_d1mnuh1 (H:1-121)
4a: SCOP_d1mnul1 (L:1-112)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1mnuh2
H:122-222
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1mnul2
L:113-219
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1mnuh1
H:1-121
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
(131)
4a
d1mnul1
L:1-112
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1mnuL02 (L:114-216)
1b: CATH_1mnuH02 (H:122-220)
1c: CATH_1mnuL01 (L:1-113)
1d: CATH_1mnuH01 (H:1-121)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1mnuL02
L:114-216
1b
1mnuH02
H:122-220
1c
1mnuL01
L:1-113
1d
1mnuH01
H:1-121
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Pfam Domains
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Asymmetric Unit 1
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