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1MNF
Biol. Unit 1
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Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
DOMAIN MOTIONS IN GROEL UPON BINDING OF AN OLIGOPEPTIDE
Authors
:
J. Wang, L. Chen
Date
:
05 Sep 02 (Deposition) - 07 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2 (1x)
Keywords
:
Groel, Forced Unfolding, Domain Motions, Opposite Allosteric, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, L. Chen
Domain Motions In Groel Upon Binding Of An Oligopeptide.
J. Mol. Biol. V. 334 489 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 14)
Info
All PROSITE Patterns/Profiles
1: CHAPERONINS_CPN60 (A:405-416,B:405-416,C:405-416,D:40...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHAPERONINS_CPN60
PS00296
Chaperonins cpn60 signature.
CH60_ECOLI
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 42)
Info
All SCOP Domains
1a: SCOP_d1mnfa1 (A:2-136,A:410-526)
1b: SCOP_d1mnfb1 (B:2-136,B:410-526)
1c: SCOP_d1mnfc1 (C:2-136,C:410-526)
1d: SCOP_d1mnfd1 (D:2-136,D:410-526)
1e: SCOP_d1mnfe1 (E:2-136,E:410-526)
1f: SCOP_d1mnff1 (F:2-136,F:410-526)
1g: SCOP_d1mnfg1 (G:2-136,G:410-526)
1h: SCOP_d1mnfh1 (H:2-136,H:410-526)
1i: SCOP_d1mnfi1 (I:2-136,I:410-526)
1j: SCOP_d1mnfj1 (J:2-136,J:410-526)
1k: SCOP_d1mnfk1 (K:2-136,K:410-526)
1l: SCOP_d1mnfl1 (L:2-136,L:410-526)
1m: SCOP_d1mnfm1 (M:2-136,M:410-526)
1n: SCOP_d1mnfn1 (N:2-136,N:410-526)
2a: SCOP_d1mnfa3 (A:137-190,A:367-409)
2b: SCOP_d1mnfb3 (B:137-190,B:367-409)
2c: SCOP_d1mnfc3 (C:137-190,C:367-409)
2d: SCOP_d1mnfd3 (D:137-190,D:367-409)
2e: SCOP_d1mnfe3 (E:137-190,E:367-409)
2f: SCOP_d1mnff3 (F:137-190,F:367-409)
2g: SCOP_d1mnfg3 (G:137-190,G:367-409)
2h: SCOP_d1mnfh3 (H:137-190,H:367-409)
2i: SCOP_d1mnfi3 (I:137-190,I:367-409)
2j: SCOP_d1mnfj3 (J:137-190,J:367-409)
2k: SCOP_d1mnfk3 (K:137-190,K:367-409)
2l: SCOP_d1mnfl3 (L:137-190,L:367-409)
2m: SCOP_d1mnfm3 (M:137-190,M:367-409)
2n: SCOP_d1mnfn3 (N:137-190,N:367-409)
3a: SCOP_d1mnfa2 (A:191-366)
3b: SCOP_d1mnfb2 (B:191-366)
3c: SCOP_d1mnfc2 (C:191-366)
3d: SCOP_d1mnfd2 (D:191-366)
3e: SCOP_d1mnfe2 (E:191-366)
3f: SCOP_d1mnff2 (F:191-366)
3g: SCOP_d1mnfg2 (G:191-366)
3h: SCOP_d1mnfh2 (H:191-366)
3i: SCOP_d1mnfi2 (I:191-366)
3j: SCOP_d1mnfj2 (J:191-366)
3k: SCOP_d1mnfk2 (K:191-366)
3l: SCOP_d1mnfl2 (L:191-366)
3m: SCOP_d1mnfm2 (M:191-366)
3n: SCOP_d1mnfn2 (N:191-366)
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)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GroEL equatorial domain-like
(23)
Superfamily
:
GroEL equatorial domain-like
(23)
Family
:
GroEL chaperone, ATPase domain
(15)
Protein domain
:
GroEL, E domain
(15)
Escherichia coli [TaxId: 562]
(11)
1a
d1mnfa1
A:2-136,A:410-526
1b
d1mnfb1
B:2-136,B:410-526
1c
d1mnfc1
C:2-136,C:410-526
1d
d1mnfd1
D:2-136,D:410-526
1e
d1mnfe1
E:2-136,E:410-526
1f
d1mnff1
F:2-136,F:410-526
1g
d1mnfg1
G:2-136,G:410-526
1h
d1mnfh1
H:2-136,H:410-526
1i
d1mnfi1
I:2-136,I:410-526
1j
d1mnfj1
J:2-136,J:410-526
1k
d1mnfk1
K:2-136,K:410-526
1l
d1mnfl1
L:2-136,L:410-526
1m
d1mnfm1
M:2-136,M:410-526
1n
d1mnfn1
N:2-136,N:410-526
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GroEL-intermediate domain like
(23)
Superfamily
:
GroEL-intermediate domain like
(23)
Family
:
GroEL-like chaperone, intermediate domain
(15)
Protein domain
:
GroEL, I domain
(15)
Escherichia coli [TaxId: 562]
(11)
2a
d1mnfa3
A:137-190,A:367-409
2b
d1mnfb3
B:137-190,B:367-409
2c
d1mnfc3
C:137-190,C:367-409
2d
d1mnfd3
D:137-190,D:367-409
2e
d1mnfe3
E:137-190,E:367-409
2f
d1mnff3
F:137-190,F:367-409
2g
d1mnfg3
G:137-190,G:367-409
2h
d1mnfh3
H:137-190,H:367-409
2i
d1mnfi3
I:137-190,I:367-409
2j
d1mnfj3
J:137-190,J:367-409
2k
d1mnfk3
K:137-190,K:367-409
2l
d1mnfl3
L:137-190,L:367-409
2m
d1mnfm3
M:137-190,M:367-409
2n
d1mnfn3
N:137-190,N:367-409
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
GroEL apical domain-like
(41)
Family
:
GroEL-like chaperone, apical domain
(27)
Protein domain
:
GroEL, A domain
(23)
Escherichia coli [TaxId: 562]
(18)
3a
d1mnfa2
A:191-366
3b
d1mnfb2
B:191-366
3c
d1mnfc2
C:191-366
3d
d1mnfd2
D:191-366
3e
d1mnfe2
E:191-366
3f
d1mnff2
F:191-366
3g
d1mnfg2
G:191-366
3h
d1mnfh2
H:191-366
3i
d1mnfi2
I:191-366
3j
d1mnfj2
J:191-366
3k
d1mnfk2
K:191-366
3l
d1mnfl2
L:191-366
3m
d1mnfm2
M:191-366
3n
d1mnfn2
N:191-366
[
close SCOP info
]
CATH Domains
(3, 42)
Info
all CATH domains
1a: CATH_1mnfA02 (A:136-191,A:373-410)
1b: CATH_1mnfB02 (B:136-191,B:373-410)
1c: CATH_1mnfC02 (C:136-191,C:373-410)
1d: CATH_1mnfD02 (D:136-191,D:373-410)
1e: CATH_1mnfE02 (E:136-191,E:373-410)
1f: CATH_1mnfF02 (F:136-191,F:373-410)
1g: CATH_1mnfG02 (G:136-191,G:373-410)
1h: CATH_1mnfH02 (H:136-191,H:373-410)
1i: CATH_1mnfI02 (I:136-191,I:373-410)
1j: CATH_1mnfJ02 (J:136-191,J:373-410)
1k: CATH_1mnfK02 (K:136-191,K:373-410)
1l: CATH_1mnfL02 (L:136-191,L:373-410)
1m: CATH_1mnfM02 (M:136-191,M:373-410)
1n: CATH_1mnfN02 (N:136-191,N:373-410)
2a: CATH_1mnfA03 (A:192-372)
2b: CATH_1mnfB03 (B:192-372)
2c: CATH_1mnfC03 (C:192-372)
2d: CATH_1mnfD03 (D:192-372)
2e: CATH_1mnfE03 (E:192-372)
2f: CATH_1mnfF03 (F:192-372)
2g: CATH_1mnfG03 (G:192-372)
2h: CATH_1mnfH03 (H:192-372)
2i: CATH_1mnfI03 (I:192-372)
2j: CATH_1mnfJ03 (J:192-372)
2k: CATH_1mnfK03 (K:192-372)
2l: CATH_1mnfL03 (L:192-372)
2m: CATH_1mnfM03 (M:192-372)
2n: CATH_1mnfN03 (N:192-372)
3a: CATH_1mnfA01 (A:2-135,A:411-525)
3b: CATH_1mnfB01 (B:2-135,B:411-525)
3c: CATH_1mnfC01 (C:2-135,C:411-525)
3d: CATH_1mnfD01 (D:2-135,D:411-525)
3e: CATH_1mnfE01 (E:2-135,E:411-525)
3f: CATH_1mnfF01 (F:2-135,F:411-525)
3g: CATH_1mnfG01 (G:2-135,G:411-525)
3h: CATH_1mnfH01 (H:2-135,H:411-525)
3i: CATH_1mnfI01 (I:2-135,I:411-525)
3j: CATH_1mnfJ01 (J:2-135,J:411-525)
3k: CATH_1mnfK01 (K:2-135,K:411-525)
3l: CATH_1mnfL01 (L:2-135,L:411-525)
3m: CATH_1mnfM01 (M:2-135,M:411-525)
3n: CATH_1mnfN01 (N:2-135,N:411-525)
View:
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GROEL; domain 2
(26)
Homologous Superfamily
:
GROEL, domain 2
(26)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1mnfA02
A:136-191,A:373-410
1b
1mnfB02
B:136-191,B:373-410
1c
1mnfC02
C:136-191,C:373-410
1d
1mnfD02
D:136-191,D:373-410
1e
1mnfE02
E:136-191,E:373-410
1f
1mnfF02
F:136-191,F:373-410
1g
1mnfG02
G:136-191,G:373-410
1h
1mnfH02
H:136-191,H:373-410
1i
1mnfI02
I:136-191,I:373-410
1j
1mnfJ02
J:136-191,J:373-410
1k
1mnfK02
K:136-191,K:373-410
1l
1mnfL02
L:136-191,L:373-410
1m
1mnfM02
M:136-191,M:373-410
1n
1mnfN02
N:136-191,N:373-410
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
GroEL
(39)
Homologous Superfamily
:
GroEL
(39)
Escherichia coli. Organism_taxid: 562.
(11)
2a
1mnfA03
A:192-372
2b
1mnfB03
B:192-372
2c
1mnfC03
C:192-372
2d
1mnfD03
D:192-372
2e
1mnfE03
E:192-372
2f
1mnfF03
F:192-372
2g
1mnfG03
G:192-372
2h
1mnfH03
H:192-372
2i
1mnfI03
I:192-372
2j
1mnfJ03
J:192-372
2k
1mnfK03
K:192-372
2l
1mnfL03
L:192-372
2m
1mnfM03
M:192-372
2n
1mnfN03
N:192-372
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GROEL; domain 1
(26)
Homologous Superfamily
:
GROEL, domain 1
(26)
Escherichia coli. Organism_taxid: 562.
(6)
3a
1mnfA01
A:2-135,A:411-525
3b
1mnfB01
B:2-135,B:411-525
3c
1mnfC01
C:2-135,C:411-525
3d
1mnfD01
D:2-135,D:411-525
3e
1mnfE01
E:2-135,E:411-525
3f
1mnfF01
F:2-135,F:411-525
3g
1mnfG01
G:2-135,G:411-525
3h
1mnfH01
H:2-135,H:411-525
3i
1mnfI01
I:2-135,I:411-525
3j
1mnfJ01
J:2-135,J:411-525
3k
1mnfK01
K:2-135,K:411-525
3l
1mnfL01
L:2-135,L:411-525
3m
1mnfM01
M:2-135,M:411-525
3n
1mnfN01
N:2-135,N:411-525
[
close CATH info
]
Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_Cpn60_TCP1_1mnfN01 (N:23-525)
1b: PFAM_Cpn60_TCP1_1mnfN02 (N:23-525)
1c: PFAM_Cpn60_TCP1_1mnfN03 (N:23-525)
1d: PFAM_Cpn60_TCP1_1mnfN04 (N:23-525)
1e: PFAM_Cpn60_TCP1_1mnfN05 (N:23-525)
1f: PFAM_Cpn60_TCP1_1mnfN06 (N:23-525)
1g: PFAM_Cpn60_TCP1_1mnfN07 (N:23-525)
1h: PFAM_Cpn60_TCP1_1mnfN08 (N:23-525)
1i: PFAM_Cpn60_TCP1_1mnfN09 (N:23-525)
1j: PFAM_Cpn60_TCP1_1mnfN10 (N:23-525)
1k: PFAM_Cpn60_TCP1_1mnfN11 (N:23-525)
1l: PFAM_Cpn60_TCP1_1mnfN12 (N:23-525)
1m: PFAM_Cpn60_TCP1_1mnfN13 (N:23-525)
1n: PFAM_Cpn60_TCP1_1mnfN14 (N:23-525)
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(
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(
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Organisms
(
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(
)
Clan
:
no clan defined [family: Cpn60_TCP1]
(28)
Family
:
Cpn60_TCP1
(28)
Escherichia coli (strain K12)
(13)
1a
Cpn60_TCP1-1mnfN01
N:23-525
1b
Cpn60_TCP1-1mnfN02
N:23-525
1c
Cpn60_TCP1-1mnfN03
N:23-525
1d
Cpn60_TCP1-1mnfN04
N:23-525
1e
Cpn60_TCP1-1mnfN05
N:23-525
1f
Cpn60_TCP1-1mnfN06
N:23-525
1g
Cpn60_TCP1-1mnfN07
N:23-525
1h
Cpn60_TCP1-1mnfN08
N:23-525
1i
Cpn60_TCP1-1mnfN09
N:23-525
1j
Cpn60_TCP1-1mnfN10
N:23-525
1k
Cpn60_TCP1-1mnfN11
N:23-525
1l
Cpn60_TCP1-1mnfN12
N:23-525
1m
Cpn60_TCP1-1mnfN13
N:23-525
1n
Cpn60_TCP1-1mnfN14
N:23-525
[
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]
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