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1MLD
Biol. Unit 3
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Asym.Unit (202 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (101 KB)
Biol.Unit 3 (198 KB)
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(1)
Title
:
REFINED STRUCTURE OF MITOCHONDRIAL MALATE DEHYDROGENASE FROM PORCINE HEART AND THE CONSENSUS STRUCTURE FOR DICARBOXYLIC ACID OXIDOREDUCTASES
Authors
:
W. B. Gleason, Z. Fu, J. J. Birktoft, L. J. Banaszak
Date
:
24 Jan 94 (Deposition) - 26 Jan 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.83
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Oxidoreductase(Nad(A)-Choh(D))
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
W. B. Gleason, Z. Fu, J. Birktoft, L. Banaszak
Refined Crystal Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases.
Biochemistry V. 33 2078 1994
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
4
Ligand/Ion
CITRIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:12 , ARG A:80 , ARG A:86 , ASN A:118 , ARG A:152 , HIS A:176 , GLY A:210 , ALA A:223 , HOH A:382 , HOH A:384 , HOH A:393 , HOH A:406 , HOH A:409
BINDING SITE FOR RESIDUE CIT A 375
2
AC2
SOFTWARE
ILE B:12 , ARG B:80 , ARG B:86 , ASN B:118 , LEU B:148 , ARG B:152 , HIS B:176 , GLY B:210 , ALA B:223 , MET B:227 , HOH B:388 , HOH B:390 , HOH B:398 , HOH B:411 , HOH B:414
BINDING SITE FOR RESIDUE CIT B 375
3
AC3
SOFTWARE
ILE C:12 , ARG C:80 , ARG C:86 , ASN C:118 , ARG C:152 , HIS C:176 , GLY C:210 , ALA C:223 , MET C:227 , HOH C:383 , HOH C:385 , HOH C:394 , HOH C:407 , HOH C:410
BINDING SITE FOR RESIDUE CIT C 375
4
AC4
SOFTWARE
ILE D:12 , ARG D:80 , ARG D:86 , ASN D:118 , ARG D:152 , HIS D:176 , GLY D:210 , HOH D:392 , HOH D:394 , HOH D:403 , HOH D:416 , HOH D:419
BINDING SITE FOR RESIDUE CIT D 375
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: MDH (A:145-157,B:145-157,C:145-157,D:14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MDH
PS00068
Malate dehydrogenase active site signature.
MDHM_PIG
169-181
4
A:145-157
B:145-157
C:145-157
D:145-157
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1mlda2 (A:145-313)
1b: SCOP_d1mldb2 (B:145-313)
1c: SCOP_d1mldc2 (C:145-313)
1d: SCOP_d1mldd2 (D:145-313)
2a: SCOP_d1mlda1 (A:1-144)
2b: SCOP_d1mldb1 (B:1-144)
2c: SCOP_d1mldc1 (C:1-144)
2d: SCOP_d1mldd1 (D:1-144)
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)
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)
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Malate dehydrogenase
(37)
Pig (Sus scrofa) [TaxId: 9823]
(3)
1a
d1mlda2
A:145-313
1b
d1mldb2
B:145-313
1c
d1mldc2
C:145-313
1d
d1mldd2
D:145-313
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Malate dehydrogenase
(39)
Pig (Sus scrofa) [TaxId: 9823]
(3)
2a
d1mlda1
A:1-144
2b
d1mldb1
B:1-144
2c
d1mldc1
C:1-144
2d
d1mldd1
D:1-144
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1mldA01 (A:1-145)
1b: CATH_1mldB01 (B:1-145)
1c: CATH_1mldC01 (C:1-145)
1d: CATH_1mldD01 (D:1-145)
2a: CATH_1mldA02 (A:146-312)
2b: CATH_1mldB02 (B:146-312)
2c: CATH_1mldC02 (C:146-312)
2d: CATH_1mldD02 (D:146-312)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Pig (Sus scrofa)
(21)
1a
1mldA01
A:1-145
1b
1mldB01
B:1-145
1c
1mldC01
C:1-145
1d
1mldD01
D:1-145
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Pig (Sus scrofa)
(6)
2a
1mldA02
A:146-312
2b
1mldB02
B:146-312
2c
1mldC02
C:146-312
2d
1mldD02
D:146-312
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ldh_1_C_1mldD01 (D:146-310)
1b: PFAM_Ldh_1_C_1mldD02 (D:146-310)
1c: PFAM_Ldh_1_C_1mldD03 (D:146-310)
1d: PFAM_Ldh_1_C_1mldD04 (D:146-310)
2a: PFAM_Ldh_1_N_1mldD05 (D:1-144)
2b: PFAM_Ldh_1_N_1mldD06 (D:1-144)
2c: PFAM_Ldh_1_N_1mldD07 (D:1-144)
2d: PFAM_Ldh_1_N_1mldD08 (D:1-144)
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)
(
)
Organisms
(
)
(
)
Clan
:
LDH_C
(56)
Family
:
Ldh_1_C
(51)
Sus scrofa (Pig)
(1)
1a
Ldh_1_C-1mldD01
D:146-310
1b
Ldh_1_C-1mldD02
D:146-310
1c
Ldh_1_C-1mldD03
D:146-310
1d
Ldh_1_C-1mldD04
D:146-310
Clan
:
NADP_Rossmann
(1239)
Family
:
Ldh_1_N
(51)
Sus scrofa (Pig)
(1)
2a
Ldh_1_N-1mldD05
D:1-144
2b
Ldh_1_N-1mldD06
D:1-144
2c
Ldh_1_N-1mldD07
D:1-144
2d
Ldh_1_N-1mldD08
D:1-144
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Asym.Unit (202 KB)
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Biol.Unit 1 (101 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (198 KB)
Header - Biol.Unit 3
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