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1ML9
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
STRUCTURE OF THE NEUROSPORA SET DOMAIN PROTEIN DIM-5, A HISTONE LYSINE METHYLTRANSFERASE
Authors
:
X. Zhang, H. Tamaru, S. I. Khan, J. R. Horton, L. J. Keefe, E. U. Selker, X. Cheng
Date
:
30 Aug 02 (Deposition) - 23 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dim-5, Adomet-Dependent Methyltransferase Histone H3 Lysine- 9 Methylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhang, H. Tamaru, S. I. Khan, J. R. Horton, L. J. Keefe, E. U. Selker, X. Cheng
Structure Of The Neurospora Set Domain Protein Dim-5, A Histone H3 Lysine Methyltransferase
Cell(Cambridge, Mass. ) V. 111 117 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: (UNKa)
1b: (UNKb)
1c: (UNKc)
1d: (UNKd)
1e: (UNKe)
1f: (UNKf)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
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No.
Name
Count
Type
Full Name
1
UNK
6
Mod. Residue
2
ZN
3
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:66 , CYS A:81 , CYS A:128 , CYS A:132
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
CYS A:74 , CYS A:128 , CYS A:134 , CYS A:138
BINDING SITE FOR RESIDUE ZN A 2
3
AC3
SOFTWARE
CYS A:66 , CYS A:68 , CYS A:74 , CYS A:79
BINDING SITE FOR RESIDUE ZN A 3
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PRE_SET (A:64-146)
2: SET (A:149-284)
3: POST_SET (A:302-308)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRE_SET
PS50867
Pre-SET domain profile.
DIM5_NEUCR
77-159
1
A:64-146
2
SET
PS50280
SET domain profile.
DIM5_NEUCR
162-297
1
A:149-284
3
POST_SET
PS50868
Post-SET domain profile.
DIM5_NEUCR
315-331
1
A:302-308
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1ml9a_ (A:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
Histone lysine methyltransferases
(21)
Protein domain
:
Dim-5
(2)
Fungus (Neurospora crassa) [TaxId: 5141]
(2)
1a
d1ml9a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ml9A00 (A:25-308)
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Class
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Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Beta-clip-like
(18)
Homologous Superfamily
:
SET domain
(18)
Neurospora crassa. Organism_taxid: 5141.
(2)
1a
1ml9A00
A:25-308
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Pre_SET_1ml9A01 (A:25-141)
2a: PFAM_SET_1ml9A02 (A:160-284)
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Clans
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)
(
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Clan
:
no clan defined [family: Pre-SET]
(11)
Family
:
Pre-SET
(11)
Neurospora crassa
(2)
1a
Pre-SET-1ml9A01
A:25-141
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Neurospora crassa
(2)
2a
SET-1ml9A02
A:160-284
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Chain A
Asymmetric Unit 1
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