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Asym.Unit (75 KB)
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Biol.Unit 2 (410 KB)
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(1)
Title
:
VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN COMPLEX WITH THE P8A VARIANT OF CC-CHEMOKINE MCP-1
Authors
:
J. M. Alexander, D. H. Fremont
Date
:
29 Aug 02 (Deposition) - 13 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (2x)
Biol. Unit 2: A,D (6x)
Keywords
:
Herpesvirus, Viral Immune Evasion, Chemokine Binding Protein, Decoy Receptor, Immune System
(Keyword Search:
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Reference
:
J. M. Alexander, C. A. Nelson, V. Van Berkel, E. K. Lau, J. M. Studts, T. J. Brett, S. H. Speck, T. M. Handel, H. W. Virgin, D. H. Fremont
Structural Basis Of Chemokine Sequestration By A Herpesviru Decoy Receptor
Cell(Cambridge, Mass. ) V. 111 343 2002
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Hetero Components
(0, 0)
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Sites
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: SMALL_CYTOKINES_CC (D:11-53)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CC
PS00472
Small cytokines (intercrine/chemokine) C-C subfamily signature.
CCL2_HUMAN
34-76
1
D:11-53
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Exons
(2, 2)
Info
All Exons
Exon 1.2 (D:8-42)
Exon 1.3 (D:42-71)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225831
1
ENSE00001161448
chr17:
32582313-32582444
132
CCL2_HUMAN
1-26
26
0
-
-
1.2
ENST00000225831
2
ENSE00000713589
chr17:
32583241-32583358
118
CCL2_HUMAN
26-65
40
1
D:8-42
35
1.3
ENST00000225831
3
ENSE00001161442
chr17:
32583741-32584222
482
CCL2_HUMAN
65-99
35
1
D:42-71
30
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SCOP Domains
(2, 2)
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All SCOP Domains
1a: SCOP_d1ml0a_ (A:)
2a: SCOP_d1ml0d_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Viral chemokine binding protein m3
(4)
Superfamily
:
Viral chemokine binding protein m3
(4)
Family
:
Viral chemokine binding protein m3
(4)
Protein domain
:
Viral chemokine binding protein m3
(4)
Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
(4)
1a
d1ml0a_
A:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
Monocyte chemoattractant protein-1 (MCP-1, MCAF)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1ml0d_
D:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1ml0D00 (D:8-71)
2a: CATH_1ml0A01 (A:12-210)
3a: CATH_1ml0A02 (A:211-382)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Murine herpesvirus 68 (Murid herpesvirus 4)
(3)
1a
1ml0D00
D:8-71
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1330, no name defined]
(4)
Murine herpesvirus 68 (Murid herpesvirus 4)
(4)
2a
1ml0A01
A:12-210
Homologous Superfamily
:
[code=2.60.40.1340, no name defined]
(4)
Murine herpesvirus 68 (Murid herpesvirus 4)
(4)
3a
1ml0A02
A:211-382
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_IL8_1ml0D01 (D:8-67)
2a: PFAM_M3_1ml0A01 (A:14-380)
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Clan
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no clan defined [family: IL8]
(55)
Family
:
IL8
(55)
Homo sapiens (Human)
(49)
1a
IL8-1ml0D01
D:8-67
Clan
:
no clan defined [family: M3]
(3)
Family
:
M3
(3)
Murid herpesvirus 4 (MuHV-4) (Murine gammaherpesvirus 68)
(3)
2a
M3-1ml0A01
A:14-380
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Asym.Unit (75 KB)
Header - Asym.Unit
Biol.Unit 1 (139 KB)
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