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Asym. Unit
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Asym.Unit (25 KB)
Biol.Unit 1 (22 KB)
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(1)
Title
:
CATALYTIC DOMAIN OF INTRON ENDONUCLEASE I-TEVI, E75A MUTANT
Authors
:
P. Van Roey, L. Meehan, J. C. Kowalski, M. Belfort, V. Derbyshire
Date
:
28 Aug 02 (Deposition) - 30 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha/Beta Fold; Catalytic Domain; Dna-Binding Surface, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Van Roey, L. Meehan, J. C. Kowalski, M. Belfort, V. Derbyshire
Catalytic Domain Structure And Hypothesis For Function Of Giy-Yig Intron Endonuclease I-Tevi.
Nat. Struct. Biol. V. 9 806 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: CITRIC ACID (CITa)
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No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CIT
1
Ligand/Ion
CITRIC ACID
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:6 , TYR A:17 , GLY A:19 , SER A:20 , ARG A:27 , HIS A:31 , ALA A:94 , THR A:95 , HOH A:403 , HOH A:404 , HOH A:419 , HOH A:422 , HOH A:484 , HOH A:495 , HOH A:511 , HOH A:529
BINDING SITE FOR RESIDUE CIT A 300
2
AC2
SOFTWARE
ASP A:34 , LYS A:37 , CYS A:39 , LEU A:61 , TRP A:78 , HOH A:420
BINDING SITE FOR RESIDUE BME A 401
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: GIY_YIG (A:1-88)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GIY_YIG
PS50164
GIY-YIG domain profile.
TEV1_BPT4
1-88
1
A:1-88
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1mk0a_ (A:)
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Protein Domains
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(
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(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GIY-YIG endonuclease
(2)
Superfamily
:
GIY-YIG endonuclease
(2)
Family
:
GIY-YIG endonuclease
(2)
Protein domain
:
Homing endonuclease I-TevI
(2)
Bacteriophage T4 [TaxId: 10665]
(2)
1a
d1mk0a_
A:
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CATH Domains
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1a: CATH_1mk0A00 (A:1-97)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
GIY-YIG endonuclease
(2)
Homologous Superfamily
:
GIY-YIG endonuclease
(2)
Enterobacteria phage t4. Organism_taxid: 10665.
(2)
1a
1mk0A00
A:1-97
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_GIY_YIG_1mk0A01 (A:2-90)
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Clan
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GIY-YIG
(10)
Family
:
GIY-YIG
(10)
Enterobacteria phage T4 (Bacteriophage T4)
(2)
1a
GIY-YIG-1mk0A01
A:2-90
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