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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1MJS
Asym. Unit
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Asym.Unit (37 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
MH2 DOMAIN OF TRANSCRIPTIONAL FACTOR SMAD3
Authors
:
B. Y. Qin, S. S. Lam, J. J. Correia, K. Lin
Date
:
28 Aug 02 (Deposition) - 16 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Sandwich, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Y. Qin, S. S. Lam, J. J. Correia, K. Lin
Smad3 Allostery Links Tgf-Beta Receptor Kinase Activation To Transcriptional Control
Genes Dev. V. 16 1950 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067047 (E238K, chain A, )
2: VAR_065578 (T260I, chain A, )
3: VAR_067048 (R278K, chain A, )
4: VAR_065579 (R286W, chain A, )
5: VAR_036474 (P392L, chain A, )
6: VAR_SMAD3_HUMAN_CCDS10222_1_01 (P392L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067047
E
239
K
SMAD3_HUMAN
Disease (LDS3)
---
A
E
238
K
2
UniProt
VAR_065578
T
261
I
SMAD3_HUMAN
Disease (LDS3)
---
A
T
260
I
3
UniProt
VAR_067048
R
279
K
SMAD3_HUMAN
Disease (LDS3)
---
A
R
278
K
4
UniProt
VAR_065579
R
287
W
SMAD3_HUMAN
Disease (LDS3)
---
A
R
286
W
5
UniProt
VAR_036474
P
393
L
SMAD3_HUMAN
Unclassified
---
A
P
392
L
6
CancerSNP
VAR_SMAD3_HUMAN_CCDS10222_1_01
*
P
393
L
SMAD3_HUMAN
Disease (Colorectal cancer)
---
A
P
392
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MH2 (A:231-417)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MH2
PS51076
MAD homology domain 2 (MH2) profile.
SMAD3_HUMAN
232-425
1
A:231-417
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Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:228-290)
Exon 1.8 (A:290-336 (gaps))
Exon 1.9 (A:336-379)
Exon 1.10b (A:387-417)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10b
5: Boundary 1.10b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000327367
1
ENSE00001346645
chr15:
67358183-67358698
516
SMAD3_HUMAN
1-69
69
0
-
-
1.3
ENST00000327367
3
ENSE00001108083
chr15:
67457233-67457426
194
SMAD3_HUMAN
69-134
66
0
-
-
1.4
ENST00000327367
4
ENSE00001299299
chr15:
67457591-67457722
132
SMAD3_HUMAN
134-178
45
0
-
-
1.5
ENST00000327367
5
ENSE00001639631
chr15:
67459117-67459191
75
SMAD3_HUMAN
178-203
26
0
-
-
1.6
ENST00000327367
6
ENSE00001108077
chr15:
67462892-67462942
51
SMAD3_HUMAN
203-220
18
0
-
-
1.7
ENST00000327367
7
ENSE00001108067
chr15:
67473579-67473791
213
SMAD3_HUMAN
220-291
72
1
A:228-290
63
1.8
ENST00000327367
8
ENSE00001108070
chr15:
67477065-67477202
138
SMAD3_HUMAN
291-337
47
1
A:290-336 (gaps)
47
1.9
ENST00000327367
9
ENSE00001684341
chr15:
67479703-67479847
145
SMAD3_HUMAN
337-385
49
1
A:336-379
44
1.10b
ENST00000327367
10b
ENSE00001346632
chr15:
67482751-67487533
4783
SMAD3_HUMAN
385-425
41
1
A:387-417
31
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mjsa_ (A:)
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(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SMAD/FHA domain
(62)
Superfamily
:
SMAD/FHA domain
(62)
Family
:
SMAD domain
(13)
Protein domain
:
Smad3 MH2 domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1mjsa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mjsA00 (A:228-417)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Tumour Suppressor Smad4
(52)
Homologous Superfamily
:
[code=2.60.200.10, no name defined]
(17)
Human (Homo sapiens)
(15)
1a
1mjsA00
A:228-417
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_MH2_1mjsA01 (A:228-402)
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Clans
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(
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Clan
:
SMAD-FHA
(27)
Family
:
MH2
(8)
Homo sapiens (Human)
(8)
1a
MH2-1mjsA01
A:228-402
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Chain A
Asymmetric Unit 1
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Asym.Unit (37 KB)
Header - Asym.Unit
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